Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0393 ATGTCTACGCAAAAACCTAAGCTTGGTCGGATTCCAAGTATCAGAGACCGAGTGGAAGACACTCTCTCCGCTCACCGTAACGAACTAGTTTCTCTCCTCTCCAGGTATGTGGCTCAAGGAAAAGGGATTTTGCAACCCCATAGTTTGATTGATGAGCTCGAAGACGTCCTCGGCCAGGATCAATCAGCTCTGGATCTTAGGAATGGTCCCTTTGGTGATATTATCAAGTCTGCACAGGAAGCCATAGTTTTGCCTCCTTTTGTCGCAATAGCGGTTCGTCCAAGACCTGGAGTCTGGGAATATGTCCGTGTTAATGTCTTTGAACTCAGTGTGGAACAATTGAGCGTTGCTGAGTATCTCAGCTTCAAAGAAGAACTTGTAGATGGAAAGGTTAATGATAATTTTGTATTGGAGCTTGATTTTGAGCCATTTAATGCAACATTTCCTCGCCCAACCCGCTCCTCATCCATTGGCAATGGTGTCCAATTTCTCAACCGCCACCTTTCTTCGAGTATGTTCCATAACAAAGATTCCTTGGAGCCTTTGCTTGATTTCCTCCGAGCTCATAAATATAAAGGCCATGCACTGATGCTAAATGATAGAATAAAAACCATCTCTAAACTTCAGTCTGCTTTGGCTAAAGCCGAGGATCATCTTTCTAAGCTCGCACCTGATTCTCTCTATTCTGAGTTTGAATATATATTACAAGGAATGGGTTTTGAGAGAGGCTGGGGTGATACTGCTGAACGCGTGTTAGAGATGATGCATCTGCTATTAGATATTCTTCATGCTCCTGATCCGTCTACACTCGAGACTTTTCTTGGGAGAGTGCCTATGGTGTTCAATGTTGTCATATTATCTCCACATGGCTACTTTGGGCAAGCCAATGTCCTGGGTTTGCCTGACACTGGTGGACAGGTTGTTTATATACTAGATCAAGTGCGTGCTCTTGAGAATGAAATGCTCCTTCGAATCAAGAAACAGGGACTTGATTTCACTCCTAGAATTCTAATTGTTACAAGGTTAATACCTGAATCAATGGGGACAACATGCAATCAGCGGCTAGAAAGAGTCAGTGGTACTGACTACACTCATATTCTGCGTGTGCCGTTCAGATCAGATAATGGAACTCTGCATAAATGGATCTCAAGGTTTGATGTATGGCCTTATCTAGAGACTTATTCAGAGGATGTTGCCAGTGAAATTACTGCTGAGTTACAAGGTTATCCTGATTTTATCATTGGAAACTACAGTGATGGGAACCTTGTTGCATCTTTATTGGCTTATAAAATGGGAGTTACACAGTGCACAATTGCGCATGCACTGGAGAAGACAAAATATCCAGATTCAGATATATATTGGAAGAAATTTGAGGACAAATACCATTTTGCATGTCAGTTCACTGCTGATCTGATAGCCATGAACAATGCTGATTTTATCATCACCAGTACATACCAAGAGATTGCAGGAACGAAAAATACTGTTGGGCAGTATGAGAGCCACTCGTCTTTTACTCTTCCTGGACTCTATAGGGTTGTTCATGGAATTAATGTTTTTGATCCCAAGTTCAATATTGTCTCTCCTGGAGCAGATATGTCAATATATTTCCCCTACTCTGAGAAGCAGAAGAGACTTACAGCCCTGCACAGTTCAATTGAAAAGCTATTATATGATTCTGAGCAGACTGATGATTGCATTGGTTCACTGAAAGACCGGTCGAAGCCCATCATATTCTCCATCGCAAGGCTAGATAGAGTTAAAAACATAACTGGTTTGGTAGAAAGCTATGCGAAGAACAACAAATTGAGGGAACTGGTCAATCTTGTCATCGTAGCTGGTTATATTGATGTGAAAAAGTCCAGGGACAGAGAAGAAATTGCAGAAATTGAGAAGATGCATGAACTCATGAAAAACTATAATTTAAATGGTGATTTTCGGTGGATTGTCTCCCAAACTAATAGAGCACGTAACGGGGAGCTGTATCGCTACATAGCTGATACAAAAGGTGCTTTTGTTCAGCCTGCTTTCTATGAAGCTTTTGGACTTACAGTTGTGGAGGCCATGACTAGTGGGCTTCCCACATTTGCTACCCTCCATGGTGGTCCTGCTGAGATCATCGAGCATGGTGTATCAGGATTCCATATTGATCCTTATCACCCTGACCAAGCTTCAAACCTATTGGTTGAATTCTTCCAACGATGCAAGGAGGATCCAAGCCATTGGAATAAAATATCTGATGGCGGTCTTCAAAGAATTTATGAAAGGTATACATGGAAGATATATTCTGAAAGGCTTATGACTTTGGCGGGAGTTTATGGCTTCTGGAAACATGTTTCCAAATTAGAGAGGCGTGAAACTCGACGATATCTTGAGATGTTCTATATCCTTAAGTTTCGTGATTTGGCAAATTCTGTTCCACTTTGTTAG 2427 0.417 MSTQKPKLGRIPSIRDRVEDTLSAHRNELVSLLSRYVAQGKGILQPHSLIDELEDVLGQDQSALDLRNGPFGDIIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVFELSVEQLSVAEYLSFKEELVDGKVNDNFVLELDFEPFNATFPRPTRSSSIGNGVQFLNRHLSSSMFHNKDSLEPLLDFLRAHKYKGHALMLNDRIKTISKLQSALAKAEDHLSKLAPDSLYSEFEYILQGMGFERGWGDTAERVLEMMHLLLDILHAPDPSTLETFLGRVPMVFNVVILSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKKQGLDFTPRILIVTRLIPESMGTTCNQRLERVSGTDYTHILRVPFRSDNGTLHKWISRFDVWPYLETYSEDVASEITAELQGYPDFIIGNYSDGNLVASLLAYKMGVTQCTIAHALEKTKYPDSDIYWKKFEDKYHFACQFTADLIAMNNADFIITSTYQEIAGTKNTVGQYESHSSFTLPGLYRVVHGINVFDPKFNIVSPGADMSIYFPYSEKQKRLTALHSSIEKLLYDSEQTDDCIGSLKDRSKPIIFSIARLDRVKNITGLVESYAKNNKLRELVNLVIVAGYIDVKKSRDREEIAEIEKMHELMKNYNLNGDFRWIVSQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTSGLPTFATLHGGPAEIIEHGVSGFHIDPYHPDQASNLLVEFFQRCKEDPSHWNKISDGGLQRIYERYTWKIYSERLMTLAGVYGFWKHVSKLERRETRRYLEMFYILKFRDLANSVPLC* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0393 808 Gene3D Glycogen Phosphorylase B; 531 758 - -
Lja1g0393 808 PANTHER SUCROSE SYNTHASE 1 807 - -
Lja1g0393 808 PANTHER - 1 807 IPR012820 GO:0005985|GO:0016157
Lja1g0393 808 Pfam Sucrose synthase 10 557 IPR000368 GO:0005985|GO:0016157
Lja1g0393 808 Gene3D - 150 279 - -
Lja1g0393 808 Gene3D - 13 149 - -
Lja1g0393 808 Gene3D Glycogen Phosphorylase B; 284 801 - -
Lja1g0393 808 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 299 767 - -
Lja1g0393 808 TIGRFAM sucr_synth: sucrose synthase 26 806 IPR012820 GO:0005985|GO:0016157
Lja1g0393 808 Pfam Glycosyl transferases group 1 569 743 IPR001296 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0393 Lja-Chr1 3453313 3459932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0393 6 806 Glycosyltransferase AT4G02280 81.898 0.0 1405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0393 K00695 - gmx:100802045 1488.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0393 1 3453313 3459932 Lja1g0393 1 3453313 3459932 ECH