Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0389 ATGGACCACATGACAAAGCTCTTCACGGTCTTGGCTCTCTGTGTGGCTTTCCTGGCACACCATACAACCGCACTAAACAAGAACGCTGGCAACAAGGACCTCATCAACAGGGTCTGCAACCTCGTACCAGCCAACAAGCAAATGTGCGTGGAAATCCTTCACTCAGACCCTATCAGATCCCAAAATGGTGACCTCAAGGACCTCGCAATCATATCACTTCGGGTTGCGGCTAAAAACGCTTCCGGAATCCTCACTGACGTGAAGATGCTCATCGATGACCCCAACTTGGACCCAGATGTTCAACAAGGTCTTGCTGATTGCAAAGAAACCATCTTGGACGCTGAGAGCCAGCTTGAGGACACCATCGCTTCATTGTTGGTGGATTCCGATGTTGATGCTCAGACATGGTTGAAGGCTGCATTGGCTGCCATCACCACCTGTGATGATTCTATTCCAGGGAGTGACGATGTTCTCTCTGTTAAGAGCTCTGTTTTCCGCAACCTCTGCAACATTGTTGTCGCCATCACCAAGGCCTTGCCTAAAAATCGTTGA 552 0.4964 MDHMTKLFTVLALCVAFLAHHTTALNKNAGNKDLINRVCNLVPANKQMCVEILHSDPIRSQNGDLKDLAIISLRVAAKNASGILTDVKMLIDDPNLDPDVQQGLADCKETILDAESQLEDTIASLLVDSDVDAQTWLKAALAAITTCDDSIPGSDDVLSVKSSVFRNLCNIVVAITKALPKNR* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0389 183 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 180 IPR035513 -
Lja1g0389 183 SMART PMEI_2 30 175 IPR006501 GO:0004857
Lja1g0389 183 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 179 IPR035513 -
Lja1g0389 183 PANTHER PECTINESTERASE 1 180 - -
Lja1g0389 183 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 178 IPR006501 GO:0004857
Lja1g0389 183 Pfam Plant invertase/pectin methylesterase inhibitor 33 175 IPR006501 GO:0004857
Lja1g0389 183 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0389 Lja-Chr1 3412998 3413874 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0389 - - gmx:102667060 243.047