Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0385 ATGCTCCCCTCCAAACCTCCTCGCCGGAAAATTGTTCCGGAGAACGGCGATGACTCCGCCGATAAATTGGACCAGCTCCTCCTCTCCTCCGCCATATGCAACAACGAGGACTTAGGACCCTTCATCCGCAAGGCCTTCATCTCCGGCAAGCCAGAGTCACTCCACCACCACCTCCGCCACTTCGCTCGCTCCAAAGAGTCCGAGATCGAAGAGGTCTGCAAGGCGCACTACCAGGACTTCATCCTCGCCGTCGACGATCTCCGATCCCTCCTCTCCGACGTCGAATCCCTCAAGTCCTCCCTCTCTGACTCCAACTCCAAGCTCCAGTCCGTCGCTCGCCCTCTCCTCTCCTCCCTCGACGCCCTCGTCGAAACGCGGAATGTATCCAGGAACGTCAACCTCGCCATCGACTCGGTCGGAGAGTGCGTTCAGCTGATGGAAGATTGCTCCCGCGCCAACCGCCACCTCTCCAATGATAACTTCTACATGGCGTTGAAGTGCGTCGACGCGATCGAGAGGGAGCATCTGGACAAAACGGCGTCGTCGACTCTGAGGAGGATGCTGGAGAAGAAGATTCCGGAGATTCGATCTCACATAGAGAGGAAGGTGAACAAGGAGTTTGGGGACTGGTTGGTGGAGATCCGAGTGGTGAGTCGCAATTTGGGGCAACTTGCAATCGGTCAGGCCTCGGCGGCGAGGCAGAGAGAGGAGGATCTCAGAATCAAGCAGCGGCAAGCGGAGGAGCAGAGCAGGCTCAGCGTGAGGGACTGCATTTATGCTTTGGAGGAAGAGGATGAAGATGGAACTGCCGGTGGTGGCGGTGGGATCGGAGATGACGGGTATGGTAACGGTAACGGTGGTGGTGGAATTCTGGGGTTTGATTTGACTCCGCTGTACAGGGCTTACCATATTCACCAGACGTTAGGGTTAGAGGATCGGTTCAAGAAGTATTACTATGAGAATCGGAAGCTTCAGTTGACTTCGGATTTCCAGGTATCGTCGATGACCCCTTTTCTCGAATCACATCAAACCTTCTTCGCGCAGATTGCGGGGTTTTTCGTGGTGGAGGATCGAGTATTGAGGACTGGGGGTGGGTTGATATCGAGAATGGAAGTTGAGAATTTGTGGGAGATTGCTGTTAGCAAAATGTGTTCTGTGTTAGAGGATCAGTTTTCCAGGATGCAAACTGCTAATCATCTTTTGTTGATTAAGGACTATGTGAGTCTGTTGGGAGTGACCCTGCGGCGATTCGGGTACCCCATTGATGCATTGCTTGATGTTTTGAGCAAACACAGGGATAAGTACCATGAACTGCTATTGTCAGATTGTAGGAAGCAGATAGCTGAGGCTGTTGGTGCTGATAAGTTTGAGCAGATGTTGATGAAGAAAGAGTATGAGTATTCCATGAATGTTCTTTCTTTCCAGATTCAAACATCAGATATCATACCTGCTTTTCCTTATTTAGCACCATTTTCATCCACGGTGCCGGATTGTTGTCGCATTGTGCGGTCCTTCATTGAGGATTCTGTGAGTTTCATGTCGTATGGAGGGCAGCTTGAGTTCTATGAAGTAGTTAAGAAATATTTAGACAGGCTCTTGAGTGAGGTTCTAGATGAAGCTTTGGTGAAGCTTATTAACACATCAGTTAGTGGTGTCTCACAGGCTATGCAAATGGCAGCAAATATGGCTGTGTTGGAGCGTGCTTGTGATTTTTTCTTTCGCCATGCTGCACAGCTTTCGGGGGTTCCCTTGAGAATGGTGGAGAGAAGCAGAAGGCAGTTTCCTCTGAGAAAAGCTCGTGATGCTGCAGAAGAGATGCTCTCTGGTCTACTCAAAGCCAAAGTGGATGGATTCATGAGCTTGATTGAGAATGTAAATTGGATGAGTGATGAGCCTCCTCAGAGTGGAAATGAATATGTGAATGAGGTTATAATTTATTTGGAAATTTTGGTTTCAACAGCTCAACAGATATTGCCATCTCAAGTACTTAAAAGAGCTCTACAAGAAGTTCTTTCTCATATATCGCAGAAGATTGTGGAGACTTTGGTTAGTGATTCTGTTAAGAGGTTCAATTTCAGTGCTGTTACTGGAATCGATACAGATATCCGGCTCTTAGAATCATTTGCTGATAATCAGGGTGCCCTTTTCTCGGATGGGGATGTTGATCAATTGAAAACAGCCCTTGTCGAGTCAAGGCAATTAGTTAATTTGCTATCAAGCAATCATCCAGAGAACTTCCTGAATCCAGTGATTAGGGAGAGAAGTTACAATGCCTTGGACCATAAGAAAGTGGTAATTGTTTCCGAAAAATTGAGGGATCCTTCTGAACGACTCTTTGGAACCTTTGGTAGTCGTGGGGCCAGACAGAATCCCAAAAAGAAATCACTGGATACATTGATAAAAAGACTTAGGGATGTTAGCTAA 2424 0.4798 MLPSKPPRRKIVPENGDDSADKLDQLLLSSAICNNEDLGPFIRKAFISGKPESLHHHLRHFARSKESEIEEVCKAHYQDFILAVDDLRSLLSDVESLKSSLSDSNSKLQSVARPLLSSLDALVETRNVSRNVNLAIDSVGECVQLMEDCSRANRHLSNDNFYMALKCVDAIEREHLDKTASSTLRRMLEKKIPEIRSHIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASAARQREEDLRIKQRQAEEQSRLSVRDCIYALEEEDEDGTAGGGGGIGDDGYGNGNGGGGILGFDLTPLYRAYHIHQTLGLEDRFKKYYYENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFVVEDRVLRTGGGLISRMEVENLWEIAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRFGYPIDALLDVLSKHRDKYHELLLSDCRKQIAEAVGADKFEQMLMKKEYEYSMNVLSFQIQTSDIIPAFPYLAPFSSTVPDCCRIVRSFIEDSVSFMSYGGQLEFYEVVKKYLDRLLSEVLDEALVKLINTSVSGVSQAMQMAANMAVLERACDFFFRHAAQLSGVPLRMVERSRRQFPLRKARDAAEEMLSGLLKAKVDGFMSLIENVNWMSDEPPQSGNEYVNEVIIYLEILVSTAQQILPSQVLKRALQEVLSHISQKIVETLVSDSVKRFNFSAVTGIDTDIRLLESFADNQGALFSDGDVDQLKTALVESRQLVNLLSSNHPENFLNPVIRERSYNALDHKKVVIVSEKLRDPSERLFGTFGSRGARQNPKKKSLDTLIKRLRDVS* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0385 807 PANTHER SEC15 7 807 IPR007225 GO:0006886|GO:0090522
Lja1g0385 807 Gene3D Dsl1p vesicle tethering complex, Tip20p subunit, domain D 599 746 IPR042044 -
Lja1g0385 807 PANTHER EXOCYST COMPLEX COMPONENT SEC15B 7 807 - -
Lja1g0385 807 Pfam Exocyst complex subunit Sec15-like 467 771 IPR046361 -
Lja1g0385 807 Gene3D - 421 593 IPR042045 -
Lja1g0385 807 Coils Coil 229 249 - -
Lja1g0385 807 PIRSF Sec15 4 807 IPR007225 GO:0006886|GO:0090522
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0385 Lja-Chr1 3360206 3362964 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0385 K19985 - gmx:100796432 1375.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0385 1 3360206 3362964 Lja1g0385 1 3360206 3362964 ECH