Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0362 ATGTTAGACAAGTGTTTGGGTTCTCAAAAGGCAAGAAGATTCCAGAGATTTCTCAGCCAGTGCAAGGTCACAATCCTCTGTTTTTTCCTCACCATTGTTGTCCTGCGCGGCACCATCGGCGCCGGAAAATTCGGAACGCCGGAGCAGGACTTCGTCGACCTTCGTAACCGCTTATCCTCCCGGAAGCTTGCCGAGCCTCATCGTGTTCTCGGTGAGCTTCATTCCACCACCAATTACAACGCCTTCGACATCAACACCATATTGGTCGATGAAGAAGAAGAAGGAGAAAAGGACCCTGAGAAACGGAACCCTCACGAGCCTTATCGTCTTGGACCCAAAATCTCCAATTGGGATGAACAGAGATCGAAGTGGCTTCGTGAAAACCCTAATTACCCGAATTTCATTCGACCCGGCAAGCCTCGGGTTCTTCTGGTAACTGGGTCGTCGCCGAAACCGTGTGAGAATCCTGTTGGGGATCATTACTTGTTGAAGTCTATTAAGAACAAGATTGATTATTGTCGCTTGCATGGTATTGATGTGTTCTACAACATGGCTCTGTTTGATGCTGAAATGGCAGGGTTCTGGGCGAAGCTTCCTTTGATTCGGAAGCTTCTTTTGTCTCATCCTGAAGTGGAGTTTCTGTGGTGGATGGATAGTGATGCCATGTTCACTGACATGGCATTTGAAGTGCCGTGGGAGAGGTATAAGGACTCTAACTTGGTGATGCATGGTTGGAAAGAGATGGTGTATGACCAGAAGGATTGGATTGGGTTGAACACTGGGAGCTTTCTGTTGAGGAACTGCCAATGGTCTTTGGATATTCTTGATGCCTGGGCGCCAATGGGGCCAAAAGGGAAAATCAGGGATGAGGCTGGGAAATTGCTGACAAAGGAGCTGAAAGACAGGCCTATTTTTGAAGCTGATGATCAATCAGCGATGGTTTATTTGCTGGCGAAAAAGAGGGACTTGTGGGGTGATAAGGTTTATCTTGAGAATGGTTATTACTTGCATGGTTACTGGGGTATTCTGGTTGATAAGTATGAGGAGATGATTGAGAATTACCACCCTGGTTTTGGGGATCATAGGTGGCCGTTGGTCACTCATTTTGTGGGTTGTAAGCCTTGTGGGAAGTTTGGGGATTACCCTGTTGAGAGATGCTTGAAGCAGATGGATAGGGCTTTCAATTTTGGAGATAACCAGATACTGCAGATTTATGGGTTCACTCACAAGTCTTTGGGTAGTAGGAGGGTTAAGAGAATACGGAATGAGAGTAGCAATCCTCTTGAGGTCAAAGATGAACTTGGCTTGCTTCATCCAGCATTTAAAGCAGTTCATGTATCATCATCATCTAGCTGA 1356 0.4639 MLDKCLGSQKARRFQRFLSQCKVTILCFFLTIVVLRGTIGAGKFGTPEQDFVDLRNRLSSRKLAEPHRVLGELHSTTNYNAFDINTILVDEEEEGEKDPEKRNPHEPYRLGPKISNWDEQRSKWLRENPNYPNFIRPGKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRLHGIDVFYNMALFDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDSNLVMHGWKEMVYDQKDWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKIRDEAGKLLTKELKDRPIFEADDQSAMVYLLAKKRDLWGDKVYLENGYYLHGYWGILVDKYEEMIENYHPGFGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAFNFGDNQILQIYGFTHKSLGSRRVKRIRNESSNPLEVKDELGLLHPAFKAVHVSSSSS* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0362 451 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 138 288 IPR029044 -
Lja1g0362 451 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 4 449 IPR008630 GO:0016021|GO:0016757
Lja1g0362 451 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE-RELATED 4 449 - -
Lja1g0362 451 MobiDBLite consensus disorder prediction 91 112 - -
Lja1g0362 451 Pfam galactosyl transferase GMA12/MNN10 family 139 378 IPR008630 GO:0016021|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0362 Lja-Chr1 3135840 3138237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0362 1 450 Glycosyltransferase AT4G02500 77.419 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0362 K08238 - gmx:100794266 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0362 1 3135840 3138237 Lja1g0362 1 3135840 3138237 ECH