Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0358 ATGGCTGTGGTTGCAGCAGCTCAGCAATTCCAATGCTTCTTCTTCTTCTCAGAACCAAATTCGATGATCAGAACCACAACATGGCCATGCTTACCTCTTCTTACACCACCGTCACGTAGAAAGATTCAATTCTCACTCATCTCACGCGCTTCCTCGCAGACCCCAGAAGCTGCTCAGACTCAAACCGCTGAATCCTGCGTCAATTTGGGTCTTGACCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTGACTCAGTTTGAAACAGCGCTTTCCTTGAATCCCAACCCTGTGGAGGCTCAAGCTGCTTTCTACAACAAAGCTTGCTGCCATGCATACAGAGGAGAGGGAAAGAAAGCTGCTGAGTGTCTCCGCACTGCTTTGAGGGAATACAACCTAAAATTTTCCACCATTCTTAATGATCCAGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCTAGGCTGGGTGGGGAAGATATTGGCTCCAGTTTTCGGAGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGTGGGATTAGAAGATTCTTTTATGTAGCACTGACGGCAGCTGCAGGAGTATCATTGTTGCTTACCATACCCAGACTCTTTCTTGCCATTAAAGGCGGTGATGATGCTCCTGGTCTCTTGGAAACTTCTGGGAATGCTGCCATTAACATTGGAGGTATTGTTGTTTTTGTGGCATTATTCTTTTGGGACAACAAAAAAGAGGAGGAACAACTGGCGCAAATATCTCGAAATGAAACACTATCAAGGTTGCCTTTGCGCCTTTCAACTAATCGCATAGTTGAACTTGTGCAGCTACGGGACACAGTTAGGCCAGTCATCTTAGCAGGCACAAAAGAAACAGTATCTTTGGCTTTACGAAAAGCAGAGAGATTTCGCTCTGAACTCATTAAACGTGGTGTTCTGTTAGTCCCTGTCATCTGGGGAGAAGGTAAAGAACCAAAAATTGAAAAGAAAGGTTTTGGTCTTTCTTCAAAGGCTGCTGCTGAGGCTCTTCCCTCCATTGGGGAAGATTTTGAAAAGCGAACACAGTCCATAACTGCAAAATCAAAGTTGAAAGCTGAAGTTAGGTTCAAGGCTGAGGTTATATCACCAGCAGAGTGGGAACGGTGGATAAGAGATCAGCAGAAGGCTGAAGGAGTCACAGTTGGTGAAGATGTGTACATAATATTGCGCTTAGATGGTCGGGTTCGAAGATCAGGGAAAGGTATGCCTGATTGGCAGAAAATTGTGAATGAGCTGCCACCAATGGAAGCACTTTTAAGCAAGCTAGAAAGATGA 1329 0.4477 MAVVAAAQQFQCFFFFSEPNSMIRTTTWPCLPLLTPPSRRKIQFSLISRASSQTPEAAQTQTAESCVNLGLDLFSKGRVKDALTQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAAECLRTALREYNLKFSTILNDPDLASFRALPEFKELQEEARLGGEDIGSSFRRDLKLISEVQAPFRGIRRFFYVALTAAAGVSLLLTIPRLFLAIKGGDDAPGLLETSGNAAINIGGIVVFVALFFWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGTKETVSLALRKAERFRSELIKRGVLLVPVIWGEGKEPKIEKKGFGLSSKAAAEALPSIGEDFEKRTQSITAKSKLKAEVRFKAEVISPAEWERWIRDQQKAEGVTVGEDVYIILRLDGRVRRSGKGMPDWQKIVNELPPMEALLSKLER* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0358 442 Pfam Tetratricopeptide repeat 63 95 IPR013105 -
Lja1g0358 442 SUPERFAMILY TPR-like 61 129 IPR011990 GO:0005515
Lja1g0358 442 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 39 442 - -
Lja1g0358 442 Pfam Low psii accumulation1 / Rep27 171 248 IPR021883 -
Lja1g0358 442 SMART tpr_5 100 133 IPR019734 GO:0005515
Lja1g0358 442 SMART tpr_5 63 96 IPR019734 GO:0005515
Lja1g0358 442 Gene3D Tetratricopeptide repeat domain 49 160 IPR011990 GO:0005515
Lja1g0358 442 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Lja1g0358 442 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 39 442 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0358 - - lja:Lj1g3v4899070.1 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0358 1 3121226 3125601 Lja1g0358 1 3121226 3125601 ECH