Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0354 ATGAGTGGTTTCTCTGATAGAGCTGTGACTCTGCTCAAAGATTTCTGCCATTCTCGGCTTCACGTTCAGCAGATTCAAGCCCAACTTATCCTCCATAACCTCCAATCAAACCCCACCATCGCTCACCACTTCATCACCGTATGCCAGTCTCACAACCTCCTCAACTCCGCTCTGCTTCTCTTCACCCTCTTCGTCCCCAGACCCCACGTTTTCATCTTCAACTCCCTCATCAGAGCTTTCTCCCACTCCCACCACCACCACAACTCCCTCACCCCACTCTCCATCTTCGCCCACATGCACCGCAACACCATCCTCCCCAACCACTACACCTTCCCTTTCCTCTTCAAGTCCCTCTCCGCCCCCTGCCACTTCGCTCAGGCGCAATCCGTCCATGCCCACGTCCTCAAACTCGGCCACCTCCACGATATCTACGTCCACAACTCCCTCTTGGGAGTCTACGCTGCTTCACCCCGCCTCTTCTCACTCTGTCGCCAACTGTTCGATGAAATGACTCACAGAGATGTCGTGTCGTGGACTGTTATGATCATGGGTTTTCGCAATGCTGGCAAGTTTGATGACGCGCTGCTCGCGTTTGAGCAGATGCAGTACGCGGGTGTGGCGCCTAACAGGGTCACCATGGTGAATGCTCTGGCCGCTTGTGCGGATTCTGGCGCGGTTGAAATGGGCGCTTGGATACATGATTTCATAAGGAGGAATGGGTGGGAGCTTGATGTGGTGTTGGGGACGGCTTTGATTGACATGTATGCGAAATGCGGGAGAGTGGAAGAGGGGGTGAGAGTTTTCAGCAGTGTGAAGGAGAAGAATGTGTTTACTTGGAATGCTGTTATTAAAGGGCTAGCTTTGGCTAAGAGCGGGGAAGAGGCAATTCGGTTGTTTAATAGAATGGAGCAGGATGGGGTTAGAGCTGATGAAGTGACTTTGCTTGCTGTTCTTTCTGCTTGCAATCACTCTGGTTTGGTGGATATGGGAAGACAGATTTTTGGTTTCTTGGTTGAGGGAAAGTATGGGTTTATTCCTAATGTCAAACACTATGCTTGTATGGTTGATCTCTTAGCTCGTTCTGGGAGTTTGAGAGAGGCATTTGAGGTCATGAGATGTATGCCTTTTGACCCAACCAAAGCTATGTGGGGGTCACTGTTGGTTAGTTCCAAATCTCAAGGTGACTTGGAGTTCAGCGAGTTCGTAGCTAGAAAACTGGTTGAGTTGGAGCCAGCGAACAGTGCTTATTATGTTCATCTGTCGAATCTGTATGCAGAGATGGGAAGATGGGATGATGTTGAGAAAGTGAGGGGAATGATGAAAGACAGACAATTGACAAAGGATTTGGGGTGTAGTTCTGTGGAGGTTGAAGAACAGGGGCACACTAGCCAAGTTTTGCTATAG 1404 0.4986 MSGFSDRAVTLLKDFCHSRLHVQQIQAQLILHNLQSNPTIAHHFITVCQSHNLLNSALLLFTLFVPRPHVFIFNSLIRAFSHSHHHHNSLTPLSIFAHMHRNTILPNHYTFPFLFKSLSAPCHFAQAQSVHAHVLKLGHLHDIYVHNSLLGVYAASPRLFSLCRQLFDEMTHRDVVSWTVMIMGFRNAGKFDDALLAFEQMQYAGVAPNRVTMVNALAACADSGAVEMGAWIHDFIRRNGWELDVVLGTALIDMYAKCGRVEEGVRVFSSVKEKNVFTWNAVIKGLALAKSGEEAIRLFNRMEQDGVRADEVTLLAVLSACNHSGLVDMGRQIFGFLVEGKYGFIPNVKHYACMVDLLARSGSLREAFEVMRCMPFDPTKAMWGSLLVSSKSQGDLEFSEFVARKLVELEPANSAYYVHLSNLYAEMGRWDDVEKVRGMMKDRQLTKDLGCSSVEVEEQGHTSQVLL* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0354 467 Gene3D Tetratricopeptide repeat domain 113 226 IPR011990 GO:0005515
Lja1g0354 467 TIGRFAM PPR: pentatricopeptide repeat domain 249 275 IPR002885 -
Lja1g0354 467 TIGRFAM PPR: pentatricopeptide repeat domain 277 310 IPR002885 -
Lja1g0354 467 TIGRFAM PPR: pentatricopeptide repeat domain 176 209 IPR002885 -
Lja1g0354 467 Gene3D Tetratricopeptide repeat domain 227 339 IPR011990 GO:0005515
Lja1g0354 467 PANTHER - 4 458 - -
Lja1g0354 467 SUPERFAMILY TPR-like 189 434 IPR011990 GO:0005515
Lja1g0354 467 Pfam E motif 395 455 IPR046848 -
Lja1g0354 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 274 IPR002885 -
Lja1g0354 467 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 458 - -
Lja1g0354 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Lja1g0354 467 Pfam PPR repeat family 173 219 IPR002885 -
Lja1g0354 467 Pfam PPR repeat family 274 321 IPR002885 -
Lja1g0354 467 Gene3D Tetratricopeptide repeat domain 340 464 IPR011990 GO:0005515
Lja1g0354 467 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Lja1g0354 467 Pfam PPR repeat 351 374 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0354 Lja-Chr1 3102015 3103418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0354 93 461 Glycoside Hydrolase AT3G49170 31.892 8.48e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0354 - - lja:Lj0g3v0239469.1 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0354 1 3102015 3103418 Lja1g0354 1 3102015 3103418 ECH