Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0353 ATGGCAACCCTTTCTGAACACGCTTCACCACCATGGCCAAACCCAAACCCTAATCCCAATTCAACCACCAACCCTAATTTCCTCCCCGAACAATCTCAAACCCTCGACTTCGATTCCCTCATGCCTCCCCCACCGCCTCACCACGACTCGCCGGAGTTTTCCCCTGCTCCACTTCCACCGCTCCCGTCGCTGCTCCACTTATCCTTTAACCAGGACCAGGCCTGCTTCGCCGCCGCCGCAGACAACGGCTTCCGCATCTACAATTGCGACCCGTACCGGGAGCTTTTCCGCCGCGAGTTCGACGGCGGAGGGATCGGCCACGTCGAGATGCTCTTCCGCTGCAACATACTGGCTCTCGTTGGCGGTGGGTCCCACCCTCAGTACCCTCCCAACAAGGTCATGATCTGGGATGACCACCAGGGCAGGTGCATTGGGGAGCTTTCGTTCCGCGCCGCCGTTCGCGGCGTGCGGCTCCGCCGTGATAGGATAATTGTAGTCGTGGAGCAGAAGATATTCGTGTATAACTTCGCCGACCTTAAGCTGATGCACCAGATTGATACTATTCCGAACCCGAAAGGGCTATGTGCTGTTTCGCACCAGTCAGATTCTCTGGTTCTCGCGTGCCCTGGTTTGCATAAGGGTCAGATTCGAGTTGAGCACTATGCGCAGAAGAAGACCAAGTTCATCTCTGCCCATGATTCGAGAATAGCTTGTTTCGCTCTCACGCTTGATGGACAGTTGATCGCCACTGCCAGCTCCAAGGGTACGCTGGTTCGGATTTATGATACGGATCATGGCACGCTTCTTCAGGAAGTAAGAAGGGGTGCAAATGCAGCTGAGATCTTCAGTTTGGCGTTCTCTTCTTGTGCTCAGTGGTTAGCAGTCTCAAGTGACAAGGGAACTGTACATGTTTTCAGCCTTAAGGTTAATTCCAGTGTCCCTGCTGAGCATGGAAAGTCACAAAGTTCATCAAATTCAGACCCCACTGCTGCCCCATCTAGCTCATCTCGCTCCTTCATTAAATTTAAAGGAGTGTTGCCCAAGTATTTCAGTTCAGAGTGGTCAGTTGCTCAGTTTCACTTACAAGAGGGCACTCATTACACTGTTGCCTTTGGTCTCCAAAAGAATACTGTCATAATTCTCGGCATGGATGGAAGCTATTACCGATGCCAGTTTGATCCAGCGCATGGAGGGGAGATGGCTCAGCTGGAATATCACAACTTTTTAAAGCCAGAAACAGAAACAGAAACAGCCTTATGA 1260 0.5198 MATLSEHASPPWPNPNPNPNSTTNPNFLPEQSQTLDFDSLMPPPPPHHDSPEFSPAPLPPLPSLLHLSFNQDQACFAAAADNGFRIYNCDPYRELFRREFDGGGIGHVEMLFRCNILALVGGGSHPQYPPNKVMIWDDHQGRCIGELSFRAAVRGVRLRRDRIIVVVEQKIFVYNFADLKLMHQIDTIPNPKGLCAVSHQSDSLVLACPGLHKGQIRVEHYAQKKTKFISAHDSRIACFALTLDGQLIATASSKGTLVRIYDTDHGTLLQEVRRGANAAEIFSLAFSSCAQWLAVSSDKGTVHVFSLKVNSSVPAEHGKSQSSSNSDPTAAPSSSSRSFIKFKGVLPKYFSSEWSVAQFHLQEGTHYTVAFGLQKNTVIILGMDGSYYRCQFDPAHGGEMAQLEYHNFLKPETETETAL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0353 419 MobiDBLite consensus disorder prediction 39 57 - -
Lja1g0353 419 MobiDBLite consensus disorder prediction 1 57 - -
Lja1g0353 419 SMART WD40_4 54 88 IPR001680 GO:0005515
Lja1g0353 419 SMART WD40_4 265 306 IPR001680 GO:0005515
Lja1g0353 419 SMART WD40_4 222 262 IPR001680 GO:0005515
Lja1g0353 419 MobiDBLite consensus disorder prediction 23 38 - -
Lja1g0353 419 Pfam WD domain, G-beta repeat 275 305 IPR001680 GO:0005515
Lja1g0353 419 MobiDBLite consensus disorder prediction 315 335 - -
Lja1g0353 419 PANTHER WD REPEAT PHOSPHOINOSITIDE-INTERACTING-LIKE PROTEIN 22 413 - -
Lja1g0353 419 SUPERFAMILY WD40 repeat-like 62 310 IPR036322 GO:0005515
Lja1g0353 419 Gene3D - 63 388 IPR015943 GO:0005515
Lja1g0353 419 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 22 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0353 Lja-Chr1 3095723 3098242 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0353 K22991 - gmx:100781692 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0353 1 3095723 3098242 Lja1g0353 1 3095723 3098242 ECH