Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0341 ATGGCGAGCTTAACCGCCAGCTTCACGGCTCGAACATGGTCCGACCTAGCCCCTCTACGCCGCCGTTCCCTTCACCCATTCATCAACAGACGCGTAACCCTCGCACCCACACTCACCCCGTTGAGAATCGTTTGCATGGCGGAACCTTATCTGATAACCAAGCTGGATTCCGCTGAGAAAACATGGAAAGAGTTATCGGTCAAGCTTGCTGATCCAGACATTGTGAATAATCATACTGAGTACCAGAAGCTAGCACAATCAGTGTCAGAGCTCGAATCGGTTGTTTCTTTGTACCGGAGATTTAAAGACTGTGAGAAGTCGCTAGAGGAAACCAAAGCTTTGGCAAAGGATGATGGAAATGATGAGGATATGGCGGAAATGATATCTTTTGAAGTTGATTCTTTGTCCAGGCAACTCGCAGAACTTGAGGAAAAGCTTAAGCTTTTACTACTTCCCAGTGATCCTCTGGATGCCAGAAACATAATGATTGAAGTACGAGCAGGTACTGGCGGTGATGAGGCAGGAATATGGGTTGGTGATCTTGTCCGAATGTATGAAAGATACAGTGAACGGAATTCTTGGAAGCATTCTACCATCTCAAGCTCTGAGGCAGAAAAAGGAGGATTCAAAACTTTTGTGATGGAGATAAAAGGAAACTGTGTCTACAGTAAATTGAAATATGAATCAGGTGTCCATCGAGTTCAACGTGTGCCTCTGACAGAAACGCAGGGCCGTGTGCATACGTCTACTGCAACAGTAGCCATCATGCCAGAGGTTGATGAAGTTGAAGTTGAAATTGACCCCAAAGATATTGAACTGACAACAGCACGTTCTGGTGGTGCTGGAGGCCAGAATGTTAACAAGGTTGAAACAGCAATTGATCTTTTCCATAAACCAACGGGAATCCGCATCTTTTGCACTGAAGAAAGGACCCAGCTTCGGAATAAGCATCGTGCTCTTCAGTTACTCCGAGCCAAACTATATGAGATTAAGTTGAGGGAGCAGCAAGAGTCAATACGAAATGAAAGGAAATCACAGATTGGTACTGGAGCGCGTGCAGAAAAAATCCGGACATACAATTATAAGGACAACAGAGTTACTGATCACAGATTGAAGATGAACTTTGAGCTCACCTCTTTTCTCGATGGTGACATAGAAAATGCTGTTCAGTCTTGTGTTACAACGGAGCAAAAGCAACTTCTGGAAGAACTTGCTGAGTCTGCAAATGCCCCGGCCAGCTGA 1242 0.4517 MASLTASFTARTWSDLAPLRRRSLHPFINRRVTLAPTLTPLRIVCMAEPYLITKLDSAEKTWKELSVKLADPDIVNNHTEYQKLAQSVSELESVVSLYRRFKDCEKSLEETKALAKDDGNDEDMAEMISFEVDSLSRQLAELEEKLKLLLLPSDPLDARNIMIEVRAGTGGDEAGIWVGDLVRMYERYSERNSWKHSTISSSEAEKGGFKTFVMEIKGNCVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEVDEVEVEIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLRNKHRALQLLRAKLYEIKLREQQESIRNERKSQIGTGARAEKIRTYNYKDNRVTDHRLKMNFELTSFLDGDIENAVQSCVTTEQKQLLEELAESANAPAS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0341 413 SMART PCRF_a_2 113 228 IPR005139 GO:0006415
Lja1g0341 413 PANTHER LD18447P 35 411 - -
Lja1g0341 413 Pfam PCRF domain 59 253 IPR005139 GO:0006415
Lja1g0341 413 Gene3D - 163 389 - -
Lja1g0341 413 Pfam RF-1 domain 260 370 IPR000352 GO:0003747|GO:0006415
Lja1g0341 413 Hamap Peptide chain release factor 1 [prfA]. 51 405 IPR004373 GO:0006415|GO:0016149
Lja1g0341 413 TIGRFAM prfA: peptide chain release factor 1 47 406 IPR004373 GO:0006415|GO:0016149
Lja1g0341 413 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 35 411 - -
Lja1g0341 413 Gene3D - 259 354 - -
Lja1g0341 413 SUPERFAMILY Release factor 60 401 IPR045853 -
Lja1g0341 413 Gene3D - 45 155 - -
Lja1g0341 413 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 277 293 IPR000352 GO:0003747|GO:0006415
Lja1g0341 413 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0341 Lja-Chr1 2970973 2976919 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0341 K02835 - gmx:100777225 660.218