Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0540 ATGATCTCTGGGGTTTACTCCGACAGCTCTCTTGAGCAACAACTAAACATGAGACTCCATTATCTCTTCTTCGGGATTTTTCTATCTCTCTCTGCCTCCTTCACGCCCAGTTCAGCCCGATTGTTCCCTAATGTATCATCTATACCCCCTTTGCTCGCCAAAAACGTGCCTCCCGGCGCGTGGGACGCCTTCCGGAACTTCACCGGCTGCCGTCCGGGAAGTAACTACGATGGTTTGGGTAAACTCAAGAAGTACTTCAACCACTTCGGCTACATTCCTGACAACCCTTCCAACTTCACCGACGACTTCGACGACGCCCTCGAATCAGCCATTAAAACTTACCAGAAGAATTTCAATCTCAACGTCACCGGTGAGCTCGATGAGAACACTCTTCAGCAGATTGTTCGACCTCGATGCGGTGTCGCTGATATAATCAACGGCACCAGCACCATGAACTCCGGCAAGGAGAACACCTCCGCCGCGAGTAACGACTTACACTTCCACACTGTCTCCCACTACACTTTCTTCCCCGGGACTCCGCGGTGGCCCGCCGGGACCCAAACTCTTACCTACGCGTTCTTGCCGGGCAACGGCCTATCAGACGAGGTTAAGAGCTTGTTCGCCACGGCCTTCGATCGATGGTCGGAGGTAACGACGTTGAGTTTCACGGAATCGTCATCGTACCAATTGGCGGACATCAAGATAGCGTTCTACTCAGGAGACCACGGAGACGGAGAGCCCTTCGACGGACCTTTGGGGACGCTGGCCCACGCGTTTTCACCAACGAACGGGAGATTCCATCTCGACGGTGAGGAGAACTGGGTGGTATCCGGCGATGTGACGCAATCGACGCTGTCGTCAGCGGTGGATCTGGAATCGGTGGCGGTACACGAGATCGGGCACTTGTTAGGGTTGGGACACTCATCGGTGGAGGATGCGATCATGTACCCGACGATATCGTCGCGGACGAGGAAGGTGACTCTGACGGACGATGATATTCAGGGGATTCAACAGCTTTACGGATCAAATCCCGATTACAACGGCTCCACGACGGCGACGACGTCTCAGCAGAACGACTCCAGCCATGGGGGCCGGCGACTCAGCGTGGCGGAGTCAACACGGGGGCTGCTCCTTCTGGTAGTCGTTGGATTGGCCCATTTGATTTTGTAG 1170 0.5487 MISGVYSDSSLEQQLNMRLHYLFFGIFLSLSASFTPSSARLFPNVSSIPPLLAKNVPPGAWDAFRNFTGCRPGSNYDGLGKLKKYFNHFGYIPDNPSNFTDDFDDALESAIKTYQKNFNLNVTGELDENTLQQIVRPRCGVADIINGTSTMNSGKENTSAASNDLHFHTVSHYTFFPGTPRWPAGTQTLTYAFLPGNGLSDEVKSLFATAFDRWSEVTTLSFTESSSYQLADIKIAFYSGDHGDGEPFDGPLGTLAHAFSPTNGRFHLDGEENWVVSGDVTQSTLSSAVDLESVAVHEIGHLLGLGHSSVEDAIMYPTISSRTRKVTLTDDDIQGIQQLYGSNPDYNGSTTATTSQQNDSSHGGRRLSVAESTRGLLLLVVVGLAHLIL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0540 389 Pfam Putative peptidoglycan binding domain 80 133 IPR002477 -
Lele56g0540 389 CDD ZnMc_MMP 181 341 IPR033739 GO:0008237|GO:0008270
Lele56g0540 389 SUPERFAMILY PGBD-like 70 144 IPR036365 -
Lele56g0540 389 MobiDBLite consensus disorder prediction 341 366 - -
Lele56g0540 389 SMART col_5 178 342 IPR006026 GO:0006508|GO:0008237|GO:0008270
Lele56g0540 389 Pfam Matrixin 186 341 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Lele56g0540 389 FunFam Metalloendoproteinase 1 69 346 - -
Lele56g0540 389 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 174 344 - -
Lele56g0540 389 PANTHER MATRIX METALLOPROTEINASE 59 347 - -
Lele56g0540 389 Gene3D Collagenase (Catalytic Domain) 70 347 IPR024079 GO:0008237
Lele56g0540 389 PRINTS Matrixin signature 134 147 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lele56g0540 389 PRINTS Matrixin signature 207 222 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lele56g0540 389 PRINTS Matrixin signature 294 319 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lele56g0540 389 PRINTS Matrixin signature 231 259 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lele56g0540 389 PRINTS Matrixin signature 328 341 IPR021190 GO:0004222|GO:0006508|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0540 Lele-ChrLele56 3957702 3961959 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0917 53 18804064 18805185 Lele56g0540 56 3957702 3961959 hybridization
Lele54g0900 54 15527779 15528900 Lele56g0540 56 3957702 3961959 hybridization