Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g0558 ATGAGACTCCATTATCTCTTCTTCGCAATTTATCTATCTCTCTCTATCTCCTTCACGCCCATTTCAGCTCGATTGTTCCCTAATGTATCATCTATACCCCCTTGGCTTGCCAAAAACGTGCCTCCCGGAGATTGGGACGCCTTCAGGAACTTCACCGGCTGCCGTCCGGGGAGTAACTACGATGGTTTGGGTAAACTCAAGAAGTACTTCAACCACTTCGGTTACATCCCTAACACTCCTTCCAACTTCACCGACCACTTCGACGCCGCCCTTGAATCCGCCATTAAAACTTACCAGAAGAATTTCAATCTCAACGTCACTGGCGAGCTCGATCAGAAGACTCTTCAGCAGATTGTTCGCCCTCGATGCGGTGTCGCTGATATAATCAACGGCACCAGCACCATGAACTCCGGCAAGGAGAATACCTCCGCCGCGAGTAACGACTTACACTTCCACACTGTCTCCCACTACACTTTCTTCCCCGGGACTCCGAAGTGGCCCGCTGGGACCCAAACTCTGACCTACGCGTTCTTGCCGGGGAACGGGCTATCAGACGAGGTGAAGAGCGTGTTCGCCACCGCCTTCGATCGATGGTCGGAGGTAACGACGTTGAGCTTCACGGAAGCGTCATCGTACCAATTGGCGGACATCAAGATAGCGTTCTACTCAGGAGACCACGGAGACGGAGAGCCATTCGACGGACCTTTGGGGACGCTGGCCCACGCGTTTTCACCGACGAACGGGAGATTCCATCTGGACGGTGAGGAGAACTGGGTGGTATCCGGCGATGTAACGCAATCGACGCTGTCGTCAGCGGTGGATCTGGAATCGGTGGCGGTACACGAGATCGGGCACTTGTTAGGGCTGGGACACTCATCGGTAGAGGAGGCGATCATGTATCCGACGATATCTTCGCTGACGAGGAAGGTGACTCTGGCGGACGATGATATTCAGGGGATTCAAGAGCTGTACGGATCAAACCCTGATTACAACGGCTCCACGACGGCGACGACGTCTCAGCAGGACGACTCCAGCTATGGAGGGCGGCGACTCAGCGTGGTGGAGTCAACGCGGGGACTACTCCTTTTGGTAGCCTTTGGATTATTCTATTTGATTTTGTAG 1122 0.5392 MRLHYLFFAIYLSLSISFTPISARLFPNVSSIPPWLAKNVPPGDWDAFRNFTGCRPGSNYDGLGKLKKYFNHFGYIPNTPSNFTDHFDAALESAIKTYQKNFNLNVTGELDQKTLQQIVRPRCGVADIINGTSTMNSGKENTSAASNDLHFHTVSHYTFFPGTPKWPAGTQTLTYAFLPGNGLSDEVKSVFATAFDRWSEVTTLSFTEASSYQLADIKIAFYSGDHGDGEPFDGPLGTLAHAFSPTNGRFHLDGEENWVVSGDVTQSTLSSAVDLESVAVHEIGHLLGLGHSSVEEAIMYPTISSLTRKVTLADDDIQGIQELYGSNPDYNGSTTATTSQQDDSSYGGRRLSVVESTRGLLLLVAFGLFYLIL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g0558 373 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 158 328 - -
Lele55g0558 373 CDD ZnMc_MMP 165 325 IPR033739 GO:0008237|GO:0008270
Lele55g0558 373 Pfam Matrixin 170 325 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Lele55g0558 373 PRINTS Matrixin signature 191 206 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lele55g0558 373 PRINTS Matrixin signature 312 325 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lele55g0558 373 PRINTS Matrixin signature 118 131 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lele55g0558 373 PRINTS Matrixin signature 278 303 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lele55g0558 373 PRINTS Matrixin signature 215 243 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lele55g0558 373 FunFam Metalloendoproteinase 1 53 330 - -
Lele55g0558 373 SUPERFAMILY PGBD-like 52 128 IPR036365 -
Lele55g0558 373 SMART col_5 162 326 IPR006026 GO:0006508|GO:0008237|GO:0008270
Lele55g0558 373 Gene3D Collagenase (Catalytic Domain) 54 331 IPR024079 GO:0008237
Lele55g0558 373 Pfam Putative peptidoglycan binding domain 64 117 IPR002477 -
Lele55g0558 373 PANTHER MATRIX METALLOPROTEINASE 43 332 - -
Lele55g0558 373 MobiDBLite consensus disorder prediction 324 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g0558 Lele-ChrLele55 3625408 3626529 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0917 53 18804064 18805185 Lele55g0558 55 3625408 3626529 hybridization
Lele54g0900 54 15527779 15528900 Lele55g0558 55 3625408 3626529 hybridization