Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0953 ATGGCATCTGACGGCGTCGTTGGGGCTACTGATTTGCCTGTGAAGAGGCAGAGAGAAGATGTAGAGAATGGGGTCTCTACTCCGACCGTCTCTGTGGAGGCGGACGGAAATGGTGTATCAGCTGTGATTCCTGGGTGGTTCTCCGAAATTAGCCCAATGTGGCCTGGGGAAGCACACTCTTTGAAGGTTGAAAAGATATTGTTTAAAGGGAAGTCTGATTACCAGGATGTCATGGTCTTCCAGTCATCAACATATGGTAAAGTTCTCGTTTTGGATGGAGTAATTCAGCTCACTGAAAGGGATGAATGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTCCTCTATTACAAATCCCAAGAAGGTTTTGGTTATTGGTGGAGGGGATGGTGGTGTCCTTCGGGAAGTGTCACGCTATTTTTCAGTTGAGAAGATAGACATTTGCGAAATTGACAAGATGGTAGTTGATGTCTCCAAGCAGTTTTTCCCTGATGTAGCAGTAGGGTATGAGGATCCACGTGTGACACTTCATATTGGTGATGGAGTTGCATTCTTGAAGGAAGTTCCAGAAGGAACTTATGATGCTGTTATTGTGGACTCATCTGACCCTATAGGCCCTGCTCAAGAGCTTTTTGAGAAGCCCTTTTTTCAGTCGGTTGCTAATGCTCTTCGTCCTGGAGGAGTTGTGTGTACTCAGGCAGAAAGCATATGGCTTCACATGAATATCATTGAGGGCATAGTTGCAAATTGTCGCCAAATATTCAAAGGCTCCGTCAACTATGCTTGGACTACAGTTCCTACATACCCAAGTGGGGTGATTGGTTTTATGGTTTGCTCAACTGAGGGACCTCCTGTGGATTTCAAGCACCCTGTGAATCCTATAGATCAAAATAACAGTAAGAAGTCAGACAGACCACTGAAGTTTTACAACTCCGAGATTCATACAGCAGCTTTCTGTCTGCCATCTTTTGCCAAGAAGGTGATCGAGCCAAAAGCAGAGTAA 1005 0.4507 MASDGVVGATDLPVKRQREDVENGVSTPTVSVEADGNGVSAVIPGWFSEISPMWPGEAHSLKVEKILFKGKSDYQDVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLSSITNPKKVLVIGGGDGGVLREVSRYFSVEKIDICEIDKMVVDVSKQFFPDVAVGYEDPRVTLHIGDGVAFLKEVPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVANALRPGGVVCTQAESIWLHMNIIEGIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMVCSTEGPPVDFKHPVNPIDQNNSKKSDRPLKFYNSEIHTAAFCLPSFAKKVIEPKAE 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0953 334 PIRSF Spermidine_synth 35 334 IPR030668 GO:0006595
Lele53g0953 334 PANTHER SPERMIDINE/SPERMINE SYNTHASE 38 332 IPR001045 GO:0003824
Lele53g0953 334 Gene3D Vaccinia Virus protein VP39 97 334 IPR029063 -
Lele53g0953 334 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 123 136 IPR030373 -
Lele53g0953 334 FunFam Spermidine synthase 1 97 334 - -
Lele53g0953 334 Pfam Spermine/spermidine synthase domain 102 289 - -
Lele53g0953 334 CDD AdoMet_MTases 122 233 - -
Lele53g0953 334 Hamap Polyamine aminopropyltransferase [speE]. 45 330 IPR001045 GO:0003824
Lele53g0953 334 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 44 281 IPR030374 -
Lele53g0953 334 FunFam Spermidine synthase 1 37 96 - -
Lele53g0953 334 Pfam Spermidine synthase tetramerisation domain 45 99 IPR035246 -
Lele53g0953 334 Gene3D Spermidine synthase, tetramerisation domain 38 96 IPR037163 -
Lele53g0953 334 TIGRFAM speE: spermidine synthase 46 324 IPR001045 GO:0003824
Lele53g0953 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 42 330 IPR029063 -
Lele53g0953 334 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0953 Lele-ChrLele53 19143081 19146301 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0953 53 19143081 19146301 Lele54g0933 54 15775037 15778232 ECH
Lele53g0953 53 19143081 19146301 Lele53g0953 53 19143081 19146301 ECH
Lele53g0953 53 19143081 19146301 Lele55g0520 55 3326598 3331971 hybridization
Lele53g0953 53 19143081 19146301 Lele56g0506 56 3702076 3705238 hybridization