Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0039 ATGTTCAGATCAGCAAGCACTGAGAAGGGAGCTGGCAAGTATGAGAAACTAGGGAAAGAAGCTTCTGGAAGGGATGAGGAACCAATGAAAGAAGAGCTCAAAAGAACCAAAAGGTTGGCATCCACAAGAGAAATAGGTTCAGGCAGTTTGCAGAGGAATCCGACGACAAAGAAGAGCCATCCCATACTCAGCCTCATGGATTTCGGAGGGAAGAAGAAAACAACGGCGAGGCCTGAGATGGTAAGATATATTGAGTATCTCAAGGAAGGAGGCATGTGGGATTCCGATTCTAATAAGCCTGTCATTTATTACAAATTCATCTGCAGGTTCAGTTCACAAAGTCAGACGACGTCGTTTGGGAAGATCACTTTATCTTCTGAGCTTCGGATAAAATTGGCAGAGGGAAGGAGCCAGCCAACTTCAACTGTGGACTGTGGAGCTCCGGCAATGGAGCTAGTAGCTTCACACTTATCCCCAAATCTTCCCAGAAAGAAATTTCCTTCTCACACCCCATTTCCTGGGCTCATCTCCAGAACTATATGCCATCAAATCCCACTTGAATTTTCATCCCATTTTATTACTTTTATAAATAGGAATGGTCGTTTTGAAGCATGTGCCCGTAAAAAGGAGAGGGTCAGCGAACTAGAGTATAGCAGAGAAGTCGAGGGAGCAGAGAAACTACATACGACCTCTTCTTTGGACGATGACTCGTCTTTCTTGTCTCTCAGCGAGAAACCTGACAGGAATTTGGCTTTGTTGGATGATTATGAAGCGGAGGAGTTTGATTACGATTCCCACCCTGACCATCGAAGCGGATATGTGGCTTTACTTGGGAAGCCAAATGTCGGGAAGAGTACACTAGCAAACCAAATGATTGGTCAAAAGTTGTCTATAGTTACACAGAAACCTCAAACAACAAGGCACCGCATTATTGGTATATGTTCTGGCTCAGATTATCAGATAATACTTTATGATACACCTGGTGTTCTCAAGAAGGAAATGCACATGTTGGACTCCATGATGATGAAGAATGTTCGCAGTGCTGCGGTCAATGCTGATTGTGTATTAATCCTTGTTGATGCGTGTAAAGTTCCTGAAAATATTGATGAAGTGTTGAAGGAAGGTGTAGAAGATATCAAGGATAAACCCCCTACTCTACTGATTCTTAATAAGAAGGATCTTATCAAACCTGGGGAAATTGCGAAGAAACTTGAGTGGTATCAGAAATATACTGATGTTGATGAGGTTATACCAGTCAGTGCTAAATATGGTCATGGCGTTGAAGATGTCAAGGACTGGATACTGTCAAAGCTTCCCAGTGGACCGGCATACTATCCAAAGGACATTGTCAGTGAGCACCCAGAAAGATTTTTTGTGGGTGAAATCATTCGAGAAAAGATCTTTATGCAGTACCGAAATGAAATACCCTATGCTTGCCAGGTGAATGTTGTAAGCTACAAGGCTCGTCCCAATGCAAAAGATTTCGTACAAGTGGAGATTGTTGTTGAAAAGAATTCACAGAAGATTATACTTATTGGAAGAGAGGGAAAGGCTTTGAAACTTCTTGCAACAGCTGCCCGTCTGGACATTGAAGACTTTCTGCAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTGAAAGAAAATTGGCGACAAGATGAAGGGCTTCTTAAGAACTATGGATACGGGGGCCAGATACGAGTTCTGTAA 1710 0.4257 MFRSASTEKGAGKYEKLGKEASGRDEEPMKEELKRTKRLASTREIGSGSLQRNPTTKKSHPILSLMDFGGKKKTTARPEMVRYIEYLKEGGMWDSDSNKPVIYYKFICRFSSQSQTTSFGKITLSSELRIKLAEGRSQPTSTVDCGAPAMELVASHLSPNLPRKKFPSHTPFPGLISRTICHQIPLEFSSHFITFINRNGRFEACARKKERVSELEYSREVEGAEKLHTTSSLDDDSSFLSLSEKPDRNLALLDDYEAEEFDYDSHPDHRSGYVALLGKPNVGKSTLANQMIGQKLSIVTQKPQTTRHRIIGICSGSDYQIILYDTPGVLKKEMHMLDSMMMKNVRSAAVNADCVLILVDACKVPENIDEVLKEGVEDIKDKPPTLLILNKKDLIKPGEIAKKLEWYQKYTDVDEVIPVSAKYGHGVEDVKDWILSKLPSGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEIPYACQVNVVSYKARPNAKDFVQVEIVVEKNSQKIILIGREGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKNYGYGGQIRVL 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0039 569 Pfam 50S ribosome-binding GTPase 274 391 IPR006073 GO:0005525
Lele53g0039 569 FunFam GTPase Era 267 450 - -
Lele53g0039 569 MobiDBLite consensus disorder prediction 9 41 - -
Lele53g0039 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 472 IPR027417 -
Lele53g0039 569 TIGRFAM small_GTP: small GTP-binding protein domain 274 433 IPR005225 GO:0005525
Lele53g0039 569 CDD Era 269 438 IPR030388 GO:0005525
Lele53g0039 569 TIGRFAM era: GTP-binding protein Era 272 545 IPR005662 GO:0003723|GO:0005525
Lele53g0039 569 Pfam KH domain 474 551 IPR004044 GO:0003723
Lele53g0039 569 Gene3D - 266 449 IPR027417 -
Lele53g0039 569 MobiDBLite consensus disorder prediction 1 61 - -
Lele53g0039 569 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 447 562 IPR009019 GO:0003723
Lele53g0039 569 Gene3D - 451 566 IPR015946 -
Lele53g0039 569 ProSiteProfiles Type-2 KH domain profile. 471 548 IPR004044 GO:0003723
Lele53g0039 569 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 270 440 IPR030388 GO:0005525
Lele53g0039 569 Hamap GTPase Era [era]. 269 562 IPR005662 GO:0003723|GO:0005525
Lele53g0039 569 MobiDBLite consensus disorder prediction 42 60 - -
Lele53g0039 569 PANTHER GTPASE ERA 210 554 IPR005662 GO:0003723|GO:0005525
Lele53g0039 569 FunFam GTPase Era 451 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0039 Lele-ChrLele53 329404 336372 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0039 53 329404 336372 Lele53g0039 53 329404 336372 ECH
Lele53g0039 53 329404 336372 Lele56g1391 56 16989908 16990365 hybridization