Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0105 ATGGCGTCCCAGAACAATCCCTCCGGATCTGGATCTGGATCTTCTCCCGCAGCCGCTAATGGCGACGTTTCTCCTCCTCGCAAGGTGGCATTGATCACCGGCATCACCGGCCAAGATGGTTCCTACCTCACCGAATTCCTCCTCAACAAAGGCTACGAAGTCCATGGCCTTATTCGCCGATCCTCTAACTTCAACACCCAACGAATCAATCACATCTACATCGATCCCCACAACACCAACAAGGCTCGAATGAAGCTTCATTATGCCGATCTCACAGATGCCTCTTCCCTCCGTCGATGGCTCGACACAATCCTCCCTGATGAGGTTTACAATCTCGCTGCCCAGTCGCATGTCGCCGTTTCCTTCGAGATCCCCGATTACACCGCAGATGTTGTCGCCACTGGTGCGCTCCGACTCTTGGAGGCTGTTCGCTCCCATATCGCCGCCACCGGTCGTAGCCATATTCGCTATTACCAGGCCGGGTCATCCGAAATGTTCGGTTCCACCCCACCTCCGCAGTCGGAGAATTCCCCATTTCATCCTCGGTCTCCTTATGCGGCGTCGAAATGCGCCGCGCATTGGTACACCGTTAATTATCGCGAGGCTTATGGGCTCTTTGCCTGCAATGGGATACTCTTCAACCACGAATCGCCGAGGCGAGGTGAGAATTTCGTGACCCGGAAGATCACGCGCGCTGTGGGTCGGATCAAGATAGGCTTGCAGCGCAAATTGTTCCTGGGGAATTTGCAGGCTTCGAGGGATTGGGGTTTTGCTGGGGATTATGTGGAGGCTATGTGGATGATGCTGCAGCAGGATAAGCCGGACGATTACGTTGTGGCCACGGAGGAATCCCACACAGTTGAAGAGTTCTTGGAGGTTGCATTTGGCTACGTGGGTTTGAATTGGAGGGATCACGTGGAGATTGACAAGAGGTACTTTAGGCCTGCGGAGGTTGACAATCTCAAGGGAGATTCAAGCAAGGCCAGGAAAGTGCTTGGGTGGAAGCCCAGGGTGGGATTTGAGCAGTTGGTGAAGATGATGGTGGACGAGGACATTGAATTGGCCAAGAGGGAGAAGGTGCTTGTGGATGCTGGCTACTTGGATGCTCAGCAACAACCTTGA 1122 0.5392 MASQNNPSGSGSGSSPAAANGDVSPPRKVALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRINHIYIDPHNTNKARMKLHYADLTDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIAATGRSHIRYYQAGSSEMFGSTPPPQSENSPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQRKLFLGNLQASRDWGFAGDYVEAMWMMLQQDKPDDYVVATEESHTVEEFLEVAFGYVGLNWRDHVEIDKRYFRPAEVDNLKGDSSKARKVLGWKPRVGFEQLVKMMVDEDIELAKREKVLVDAGYLDAQQQP 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0105 373 Pfam GDP-mannose 4,6 dehydratase 31 347 IPR016040 -
Lele51g0105 373 Gene3D - 31 337 - -
Lele51g0105 373 MobiDBLite consensus disorder prediction 1 19 - -
Lele51g0105 373 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 12 363 IPR006368 GO:0008446|GO:0019673
Lele51g0105 373 TIGRFAM gmd: GDP-mannose 4,6-dehydratase 28 354 IPR006368 GO:0008446|GO:0019673
Lele51g0105 373 MobiDBLite consensus disorder prediction 1 23 - -
Lele51g0105 373 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 353 IPR036291 -
Lele51g0105 373 Gene3D - 221 347 - -
Lele51g0105 373 FunFam GDP-mannose 4,6-dehydratase 31 229 - -
Lele51g0105 373 CDD GDP_MD_SDR_e 29 353 - -
Lele51g0105 373 Hamap GDP-mannose 4,6-dehydratase [gmd]. 28 357 IPR006368 GO:0008446|GO:0019673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0105 Lele-ChrLele51 605344 606465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0105 29 213 Miscellaneous Gene Families AT4G12250 29.016 1.16e-07 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0094 49 576766 577887 Lele51g0105 51 605344 606465 hybridization
Lele50g0111 50 666617 667738 Lele51g0105 51 605344 606465 hybridization