Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0847 ATGGCAGCGACTAGGGTTTTCGGAGCTTATAGTAGAGCCTTGATGGTGGCGGCGGCGAAGGGGGCTGCGTCCGGTGTAAAGACTGCTGCGAAGACGGCCACGCCGAAAAGTCGAGGCGGCGCCTTAACGAAGGCGATCCCCGTCTCTCCGCAGCTTGGCAAGTTTCTCGGTGCGTCTGAATCTTCACGTACTGATGCCGTCAAGAAAGTGTGGGAGCACATCAAACTCCACAAGCTCCAGAATCCTACAAACAAGAAGGAAATTGTTTGCGATGAGAAGTTGAAGATCATTTTCGAGGGGAAAGATAAAATATCGTTCACGGAGATTGCCAGATATCTTGCTAAACATTTTGTGAAATCGGGCTAA 366 0.5055 MAATRVFGAYSRALMVAAAKGAASGVKTAAKTATPKSRGGALTKAIPVSPQLGKFLGASESSRTDAVKKVWEHIKLHKLQNPTNKKEIVCDEKLKIIFEGKDKISFTEIARYLAKHFVKSG 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0847 121 SUPERFAMILY SWIB/MDM2 domain 40 119 IPR036885 -
Lele50g0847 121 ProSiteProfiles SWIB/MDM2 domain profile. 41 119 IPR003121 -
Lele50g0847 121 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 30 118 - -
Lele50g0847 121 CDD SWIB-MDM2_like 47 117 - -
Lele50g0847 121 Gene3D SWIB/MDM2 domain 36 121 IPR036885 -
Lele50g0847 121 SMART swib_2 42 121 IPR019835 -
Lele50g0847 121 Pfam SWIB/MDM2 domain 46 117 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0847 Lele-ChrLele50 5262839 5264330 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele50g0847 SWIB 7.4e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0847 50 5262839 5264330 Lele50g0847 50 5262839 5264330 ECH
Lele50g0847 50 5262839 5264330 Lele51g0833 51 5042819 5044887 hybridization
Lele50g0847 50 5262839 5264330 Lele52g0834 52 5327716 5329223 hybridization