Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0810 ATGCCTGGTTTAGTATCCGTCAAAACGCCACCGGACGCTGCTCCTCTTCGAATCTCAGTGCCAGAAGCTCAAACCCCTCAGAGATCTGACTCCTCTAACGTCAAAACACCGTCTCCTCTTCCTAAGAAGCCGCCTTCTCCTTCACCTTCTTCCCGGGCCAAACCCTCGCCGGATCGAAAGAAGAAGCTCCCTGATTCTCCTAACCCAGCTCTTTCTGAGGCTTCCCTTGACAATCCCGATCTCGGTCCCTTCCTTCTCAAGCTCGCTCGAGATACCATCGCCTCCGGCGAAGGTCCTGCCAAAGCTCTTGACTATGCCATTCGGGCCTCTAAGTCTTTCGAGCGATGTGCCGTCGAAGGGGAGCCCAGCTTGGACCTCGCCATGGGTTTGCATGTCCTGGCAGCTATATACTGTAGCTTAGGCAGGTTCGAGGAGGCTGTGCCGGTGCTCGAGCGGGCGATCCAGGTTCCCGATGTGTCCAGGGGTGCGGATCACGCTCTTGCTGCTTTCTCTGGTCATATGCAATTGGGGGATACCTTCTCTATGCTTGGGCAAGTCGACAAGTCGATCTCTTGCTATGACGAAGGCCTGAAAATTCAGATCGAAGCATTGGGTGAGACGGATCCGAGAGTCGGAGAAACTTGCAGATACTTAGCTGAGGCCAACGTTCAAGCAATGCAGTTTGATAAAGCAGAGGAACTGTGCAAAAAGACTCTTGAGATTCATCAAGCACACAGTGAACCAGCATCTCTTGAAGAAGCAGCAGATAGAAGACTTATAGCACTTGTATCTGAAGCGAAGGGAGATTATGAGTCAGCTCTTGAGCACCTTGTCCTTGCTAGCATGGCAATGATTGCAAATGGACAAGACAATGAAGTTGCTTCTATTGATGTCAGTATTGGAAACATCTATATGTCTCTCTGTCGCTTTGATGAAGCTATCTTTTCCTACCAGAAGGCCCTTACAGTCTTCAAATCATCAAAGGGGGAAAACCATCCTTCAGTGGCATCTGTTTTTGTTCGCCTTGCTGATTTGTATCACAGAACTGGAAAATTAAGAGAGTCCAAATCTTATTGTGAGAATGCTCTAAGAATATACTCAAAGCCTGTTCCGGGAACTACACCAGAAGAGATAGCAACTGGGTTGACAGAAGTTTCAGCCATTTATGAATCTGTGGATGAGCCTGAAGAGGCTCTTAAACTCCTGCAGAAGGCAATGAAGTTATTGGAGGATAAACCGGGACAGCAGAGCACAATTGCTGGCATAGAAGCACGAATGGGTGTGATGTTTTACATGATTGGGAGGTATGAAGAAGCAAGGAACTCTTTTGAGAGTGCTGTGGCAAAACTTAGAGCCAGTGGGGAAAGGAAGTCTGCCTTTTTTGGGGTTGTTTTGAACCAGATGGGATTGGCATGTGTACAACTATTCAAGATAGACGAGGCTGCTGAATTATTCGAAGAAGCTAGGGCAATTCTCGAACAGGAGTGTGGTCCATGCCATCAAGATACTCTTGGAGTATACAGCAATCTTGCAGCAACATATGATGCTATGGGAAGAGTGGGAGATGCAATTGAGATCTTGGAGTATGTCCTTAAATTGAGGGAGGAAAAGCTTGGAATAGCAAATCCTGATTTTGAAGATGAGAAGCGAAGGCTGGCTGAGCTTCTGAAAGAAGCAGGCAAGACACGGGATAGAAAAGCGAAATCCCTGGAAAACCTCATTGATCCTAGCTCAAAGAGGACAAGGAAGGAGGGGGCCAAGAGGTGGCCAGGCTTGGGTTTTAGAATTTAA 1791 0.4774 MPGLVSVKTPPDAAPLRISVPEAQTPQRSDSSNVKTPSPLPKKPPSPSPSSRAKPSPDRKKKLPDSPNPALSEASLDNPDLGPFLLKLARDTIASGEGPAKALDYAIRASKSFERCAVEGEPSLDLAMGLHVLAAIYCSLGRFEEAVPVLERAIQVPDVSRGADHALAAFSGHMQLGDTFSMLGQVDKSISCYDEGLKIQIEALGETDPRVGETCRYLAEANVQAMQFDKAEELCKKTLEIHQAHSEPASLEEAADRRLIALVSEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSSKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTPEEIATGLTEVSAIYESVDEPEEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMFYMIGRYEEARNSFESAVAKLRASGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARAILEQECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPSSKRTRKEGAKRWPGLGFRI 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0810 596 MobiDBLite consensus disorder prediction 22 37 - -
Lele50g0810 596 Coils Coil 545 565 - -
Lele50g0810 596 ProSiteProfiles TPR repeat profile. 379 412 IPR019734 GO:0005515
Lele50g0810 596 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 32 578 - -
Lele50g0810 596 MobiDBLite consensus disorder prediction 561 596 - -
Lele50g0810 596 Pfam MalT-like TPR region 132 275 IPR041617 -
Lele50g0810 596 SUPERFAMILY TPR-like 175 533 IPR011990 GO:0005515
Lele50g0810 596 Gene3D Tetratricopeptide repeat domain 173 280 IPR011990 GO:0005515
Lele50g0810 596 Gene3D Tetratricopeptide repeat domain 461 574 IPR011990 GO:0005515
Lele50g0810 596 Gene3D Tetratricopeptide repeat domain 281 460 IPR011990 GO:0005515
Lele50g0810 596 Gene3D Tetratricopeptide repeat domain 75 172 IPR011990 GO:0005515
Lele50g0810 596 MobiDBLite consensus disorder prediction 1 76 - -
Lele50g0810 596 MobiDBLite consensus disorder prediction 38 52 - -
Lele50g0810 596 FunFam Protein KINESIN LIGHT CHAIN-RELATED 2 456 573 - -
Lele50g0810 596 Pfam Tetratricopeptide repeat 464 536 - -
Lele50g0810 596 Pfam Tetratricopeptide repeat 293 367 - -
Lele50g0810 596 SMART tpr_5 170 203 IPR019734 GO:0005515
Lele50g0810 596 SMART tpr_5 504 537 IPR019734 GO:0005515
Lele50g0810 596 SMART tpr_5 127 160 IPR019734 GO:0005515
Lele50g0810 596 SMART tpr_5 379 412 IPR019734 GO:0005515
Lele50g0810 596 SMART tpr_5 420 453 IPR019734 GO:0005515
Lele50g0810 596 SMART tpr_5 462 495 IPR019734 GO:0005515
Lele50g0810 596 SMART tpr_5 212 245 IPR019734 GO:0005515
Lele50g0810 596 SMART tpr_5 336 369 IPR019734 GO:0005515
Lele50g0810 596 SMART tpr_5 294 327 IPR019734 GO:0005515
Lele50g0810 596 MobiDBLite consensus disorder prediction 561 590 - -
Lele50g0810 596 SUPERFAMILY TPR-like 290 411 IPR011990 GO:0005515
Lele50g0810 596 ProSiteProfiles TPR repeat profile. 294 327 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0810 Lele-ChrLele50 4982454 4985610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0810 127 339 Glycosyltransferase AT3G04240 24.545 3.20e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0810 50 4982454 4985610 Lele50g0810 50 4982454 4985610 ECH
Lele50g0810 50 4982454 4985610 Lele51g0792 51 4787586 4790691 hybridization
Lele50g0810 50 4982454 4985610 Lele52g0794 52 5036760 5039878 hybridization