Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0667 ATGAGAGAAATCCTGCACATCCAAGCTGGTCAATGTGGGAACCAAATTGGAGGCAAGTTCTGGGAGGTTATGTGTGATGAACATGGGATTGATCCCACGGGGAATTATGTAGGAAGTTCCCATCTTCAACTTGAGAGGGTTAACGTTTACTACAATGAAGCCAGTGGTGGTCGCTATGTTCCTAGAGCTGTGCTTATGGACCTTGAACCAGGGACCATGGACAGCCTCCGTTCTGGTCCTTTTGGAAGAATCTTCAGGCCTGACAACTTCGTCTTTGGCCAAAATGGAGCTGGAAACAACTGGGCTAAAGGCCATTACACTGAGGGAGCAGAGCTTATCGATTCTGTTCTTGATGTTGTTCGTAAAGAAGCAGAGAACTGTTTCCAAGTTTGTCATTCACTGGGAGGTGGAACAGGGTCAGGAATGGGGACTCTGCTTATCTCAAAGATCAGAGAAGAGTATCCTGATAGGATGATGATGACTTTCTCAGTCTTCCCATCTCCTAAAGTCTCTGACACTGTTGTGGAACCCTACAATGCCACGCTCTCTGTTCATCAACTTGTTGAAAATGCAGATGAATGCATGGTCCTTGACAATGAGGCTCTTTATGATATCTGTTTCAGAACCCTCAAGCTCACAAATCCAAGTTTGGATGAGCAAATGATCAATGTTCAAAACAAGAACTCATCCTACTTTGTGGAATGGATACCAAACAATGTAAAATCTAGTGTTTGTGATATTCCACCAACTGGTTTGTCCATTTCCTCTACGTTCATGGGGAACTCGACATCGATTCAAGAGATGTTTAGGCGTGTTTCGGAGCAATTCACAGTCATGTTTAAGAGAAAGGCTTTCTTGCATTGGTACACTGGAGAGGGTATGGATGAAATGGAGTTTACTGAGGCTGAGAGTAATATGAATGACTTGGTGGCAGAGTATCAACAGTATCAGGATGCAGCAGCCCAGGAAGATGAGATTGAAGACGAGGAAGAACCTATGCATGACTAA 1008 0.4415 MREILHIQAGQCGNQIGGKFWEVMCDEHGIDPTGNYVGSSHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSGPFGRIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSLDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSISSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAAAQEDEIEDEEEPMHD 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0667 335 Pfam Tubulin/FtsZ family, GTPase domain 3 206 IPR003008 GO:0005525
Lele50g0667 335 Gene3D Helix hairpin bin 265 320 IPR023123 -
Lele50g0667 335 CDD beta_tubulin 2 317 - -
Lele50g0667 335 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 218 IPR036525 -
Lele50g0667 335 SMART Tubulin_4 47 229 IPR003008 GO:0005525
Lele50g0667 335 PANTHER TUBULIN 3 217 IPR000217 GO:0005874|GO:0007017
Lele50g0667 335 SUPERFAMILY Tubulin C-terminal domain-like 216 319 IPR008280 -
Lele50g0667 335 Pfam Tubulin C-terminal domain 216 273 IPR018316 -
Lele50g0667 335 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 135 141 IPR017975 GO:0005525|GO:0005874|GO:0007017
Lele50g0667 335 PRINTS Beta-tubulin signature 41 58 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lele50g0667 335 PRINTS Beta-tubulin signature 88 99 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lele50g0667 335 PRINTS Beta-tubulin signature 108 126 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lele50g0667 335 PRINTS Beta-tubulin signature 207 219 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lele50g0667 335 Gene3D Tubulin/FtsZ, GTPase domain 1 247 IPR036525 -
Lele50g0667 335 PRINTS Tubulin signature 185 205 IPR000217 GO:0005874|GO:0007017
Lele50g0667 335 PRINTS Tubulin signature 146 167 IPR000217 GO:0005874|GO:0007017
Lele50g0667 335 PRINTS Tubulin signature 171 184 IPR000217 GO:0005874|GO:0007017
Lele50g0667 335 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Lele50g0667 335 PRINTS Tubulin signature 51 70 IPR000217 GO:0005874|GO:0007017
Lele50g0667 335 PRINTS Tubulin signature 93 104 IPR000217 GO:0005874|GO:0007017
Lele50g0667 335 PRINTS Tubulin signature 127 145 IPR000217 GO:0005874|GO:0007017
Lele50g0667 335 Coils Coil 299 319 - -
Lele50g0667 335 FunFam Tubulin beta chain 265 326 - -
Lele50g0667 335 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0667 Lele-ChrLele50 4091274 4093270 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0667 50 4091274 4093270 Lele50g0667 50 4091274 4093270 ECH
Lele50g0667 50 4091274 4093270 Lele51g0656 51 3956137 3957668 hybridization
Lele50g0667 50 4091274 4093270 Lele52g0659 52 4162970 4164480 hybridization