Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0811 ATGGCAGCGACTAGGGTTTTTGGAGCTTGTAGTAGAGCCTTGATGGCGGCGGCGGCGGCGAAGGGGGCTGCGTCCGGTGTTAAGAGTGCTGCGAAGACGGCCACGCCGAAAGGTCGAGGCAGCGCCTTAACGAAGATTATCCCCGTCTCTCCGCAGCTTGGCAAGTTTCTGGGTGCGTCTGAGTCATCACGCACCGATGCCGTCAAGAAAGTGTGGGGGCACATCAAACTCCACAACCTTCAGAATCCTACAAACAAGAAGGAAATTGTTTGCGATGAGAAGTTGAAGACCATTTTCGAGGGGAAAGATAAAATATCGTTCACAGAGATTGCCAGATATCTGGCTAACCATTTTGTGAAATCTTCTTAA 369 0.5095 MAATRVFGACSRALMAAAAAKGAASGVKSAAKTATPKGRGSALTKIIPVSPQLGKFLGASESSRTDAVKKVWGHIKLHNLQNPTNKKEIVCDEKLKTIFEGKDKISFTEIARYLANHFVKSS 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0811 122 CDD SWIB-MDM2_like 48 118 - -
Lele49g0811 122 Pfam SWIB/MDM2 domain 47 118 IPR003121 -
Lele49g0811 122 Gene3D SWIB/MDM2 domain 37 122 IPR036885 -
Lele49g0811 122 ProSiteProfiles SWIB/MDM2 domain profile. 42 120 IPR003121 -
Lele49g0811 122 SMART swib_2 43 122 IPR019835 -
Lele49g0811 122 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 29 119 - -
Lele49g0811 122 SUPERFAMILY SWIB/MDM2 domain 39 120 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0811 Lele-ChrLele49 4947394 4949017 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele49g0811 SWIB 4.5e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0811 49 4947394 4949017 Lele49g0811 49 4947394 4949017 ECH
Lele49g0811 49 4947394 4949017 Lele51g0833 51 5042819 5044887 hybridization
Lele49g0811 49 4947394 4949017 Lele52g0834 52 5327716 5329223 hybridization