Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele49g0643 ATGGGCAATCGGCGGTTCACTTTGGTCGCCACCAGTGACGAAGAGGACGATGTACCACCTCGTCCACAGAAGCAACGACAGCAACTGCAACAATCTTCTGCTTCGGAGGAGAACCGATCGAAGCAGCGTAAGAGGAAGAGGATGAAGCTTCCAGAGGAAGAAGACAAGGAGGAGGAGGGGGAAGACGAGAAAAAGAAGAGAAAGCAAAAGGACAAGGAAGAAGAAGAGTCCGCGAGTGTTGACGAAGAAGAGGAACAACCACAGGAGGACGCCAAGCCCATTGGCCATCCCGTTAGGATTTCAGGAAAAGGAAGAGGGAGGAGGAAACATTACGATTCCTTTGAGTTTGACGGGAATCAATATACACTTGAGGATCCTGTACTTCTTGTGCCTGAGGATAAAAACCAAAAGCCATATGTAGCAATTATCAAGGGCATTAGCCAGTCCTTAAATGGCAGTATGATGGTGACAGGACAGTGGTTTTATCGTCCTGAAGAAGCAGAAAGAAAAGGTGGTGGAGCTGGCAATCACTGTGTGTGTCATTTTGTTCCCTTACACAAACAAATTCCAAATCGTAAACAACATCCTGGGTTTATTGTGCAAAAGGTGTATGATACGGTAGAGAGGAAACTCTGGAAGCTTACTGATAAGGACTATGAGGATAGTAAACAGCAGGAAATTGACGAGCTTGTTCAGAAAACTCTAAAACGTATTGGTGATCTACCTGACCTTGAGCCTGAAGAAGTCCCTGCTGATCAGGAAGATCAACTGAAGAGTAAAAGAAGTTTTAGGAGAAGGAACATTTCACCTTTGGATGTTTCAAGAGATGAGGAGGCAACTCCAAAGAGCGAACAACACCTTAAACCAGAAACACCAGGAAGTTATATAGCCAATACTTCGGAGAATTATCAAGTATTAGCAAATTTCAAGGTACTAACCGGAGATTCCCATCGTGATAAATGGTTGGAAACGCTGCTTCAAAGCATTCATCATATGTGTAACTCAGATGGAAGTACACAAAGGGAAGGCAAAACAAAGGACAATTCTGATGCAATCAACCAAGGAAGCAATAATGGCGGTGCAGTAACAACAAACGATTGTCAAGACAAGGATCAGAAGAGTTCCGAGTCTTTTATTTGGCCAGATGCTGCCGTTCCGGCAATAGTTGCATTGGAAAAAGCTTCACATGATGCCCTTGCCTCAGATTATCAGAAGTATAACCAAAAATTACGGCAATTGGTGTTTAATCTCAAGAACCGTAGATTAGCTCGCCGTCTATTGAATGGAGAGTTGGAAACTTCAAAAATACTGAATATGTCTCCCAATGAACTGAAGGTATGTTTCAGATTTAAGCAAGCAGCTTCTGGTTGTTTTCTTTTATCAGTTAATACTGTTGGTTCAACCCTTGTCCGTGATTTTGATAATATTGATACCATTAGGCACTATTTAAGGCTTGATATTTTGTTTTGCGCAGAAAATTGTATTGAGTTTGAATTTTCCCGGGTAGAGTTTTCATATATCAGACTCCCATGTGATTTTTCAATTGCTGATTGTATGATTACTTTTGGTTATGATCCTCAGGAGGGTTTGACTGCTGATGAAATAGCCAAGAAGGAGCCAGATGAATCACGGCCGACGCAGGGCACGGCGATCGATACCAGGTTTGCTCCTGTTTTTGCCATATATGTGACCCCCAAAACCATCACCTGCACTTTTTATGGCCTTGATTTGACTAGGGATCTGCTATTTCAGCTGGAATGCATTGGTTGTGGTAATTCCTGGTATGCCTCACGAGATGAGTGTAAAGTTGAAGAAAGTTGTCCTTGCGGTGGAATGGATCTGAATTGGAAATCATGGATTCCGGTCTTGGTGCTGAGCTGCGTCTCAGTTGTAATTAGAAATCCAGCTGTGCACATAGCAATGCATGAATCTGATTGTTCTTCTCTTTCCTACTCTTTTTCTGTATTGATTCTGCATTTGTTGATGGGACAAGAGATGAAGTTGGATCTCAATGTGAAGTCTACAGAGGGTCTGAGTCCCGATACTGTTCTTCTATCTCATCAATATCCTTCGCATGTCAAGAGGAGACATAAAAAAATAAATCACATTGGGAAAGATGAATTTTGGGCCCTCACAGAAGACTTATCCAAAAACAGGTTTTCTAGATTCCGCAGTTCATCATGTAAAAGCATTCTTTCTAGACCTAATGGCCTGGAAGTTAATGTAGAAATGAGGCGAGGTTCCATGTATCAGAGTTCAAAGGAGGTAAAGTATATAAAAGAAATGAGCACCCGGGAGGGAAGGAAAAAGATAGAGATTTCACGTAGCAGTGACACCTCTATTTCTGGCAGCATTGTTGATTCTTTATGTAGTTCTGATGATGAAGATCCTAGAAAGAAATCTTCAAATATGTATAAGGATTCAAAATTGAATTCACGGTCTGTTTCCAGATCCTCAGCTTGCTTGGAGTCCCATTCTCCAGATGGCTTTATTGAATTTTGCATAAATTCAGATGTTAGGGATAGATTTTCTACTTCAACTGCAGAAAGAGATTCTATAAATTCAAATGCCAGGAATGATAGAGTTACTGGTTCTCTGGAGAAAGGAGTTCCTGCATTGGTCAAATCATTCTCTTCCAAGGTTGAAGCCTCTCACTTGCTATCTCCCTCAAAAAATGACTGCTTGTCAAAATCCAATTCAAATGTCCAGTCCACCCCTATCAAGAAAATGTTCAATTCATTCACGAAGTCCAAATCTTTGACAAGTCCAGGGAGCCGTAAGTTGGAAACTAGCGAGGTCAAATCAACTGGTATGTTAAATATAACAGGAAGCAGGACTTACCAGAAATCTCTCCTAAATGACTTCTCTAACACAGAAAAGTATTCTGATATTATTTCTGAGTTTATCAATAGAGATATCCAGCATTCAGGGATTGCAAGTTCACCAGTTCACCTGCATGGTAGTCTCAAGTTTGAGAACAAACATGGAGTTCCATTTTTTGAGTTCAAGGTGAATTGCCCTGAAGATTTTTTAGTGGCCAAGACGTGGAGAGTAGATAATGCTTTCAATTGGGTATATACCTTTCATTCCGTTGATGGTAGAAAGAAAAGCAGTGTCGCTGGCTTGGGATCCCATGATTGTGACAGAGTTTCCTCAATGGTAGCACAGATGTTAGTTTCCTCTAACTTATGTTCAGAATTTAACGATGGAGCCTTTGACAACTCTACGTTGACAGAATTTGTGGTATATGATCTTGCAAACTCAAGACCAAGTGCTTCACTTCAGAAAGATTCTCACTGTGACCAAGATTCTAAAACCATACAACCGTGCCATGTAGGAGTAGGGAGAGAAACATTCGAGCTTGATGAGAAAACAACTGCAATTAAGAACAAACTTCAAGAAAAGCTTTTATTTGGCCGTGTTGATTTTGATGATCCAAAATCTTATCCTTGGTTGTGCACAGAATTGCATCCGAATCTTGAAATTGCTGCCATTGTTTTGCAAATTCCATTCCACAAGAGAGAAAGTTTCAGACACACGAGAAAGAGTAGAAGTGCCAGGGAGCATCGCAACCTAAGTGATCATTCTGAGATAAAACAGAGAAGAAAGAGCCTCCACGAACACAGAGGCCCAGAACAGGTGAAGGTGGTAATTCCAAAGGGCAATCATGGTCTACCGATTGATGAAAGCCAGGGTCCCTCATGTTTACTTGATCGATGGAGACATGGTGGAGGTTGTGACTGTGGTGGGTGGGACATGGCCTGTCCGCTTGTCCTTTTAGGCAATCCTGGTATTCAATTTTCTGAAGACCGCTCTCTCATGGAGAGTTATCAAACACTGGAACTCTTTGTTCAGGGAGCAAAAGAGAGCTGCCCTACTTTAAGCATGACATTAGTTGAAGAAGGGCAATATACTGTTGATTTTCATGCACAATTATCCACAGTACAAGCATTTGCCATTTGTGTTGCTATTTTACACGGCACAGGCACCTTCCATGGCGCAGGGCGGCAGAAAAAGCAAGAGTTATCGCAATGTAGTTCAATGAAAATGCTTAAAGATGAGGACGGAGTAGAAATTTTGATAGATTCAATTACTAGAGAGGAGAAGACAGTGTCAAAGTCTTCTAAACCTAATCTTCGATCCTACGTGCTAAATCCACCTTTTTCACCTGTTGCCCGAGTATGA 4185 0.4153 MGNRRFTLVATSDEEDDVPPRPQKQRQQLQQSSASEENRSKQRKRKRMKLPEEEDKEEEGEDEKKKRKQKDKEEEESASVDEEEEQPQEDAKPIGHPVRISGKGRGRRKHYDSFEFDGNQYTLEDPVLLVPEDKNQKPYVAIIKGISQSLNGSMMVTGQWFYRPEEAERKGGGAGNHCVCHFVPLHKQIPNRKQHPGFIVQKVYDTVERKLWKLTDKDYEDSKQQEIDELVQKTLKRIGDLPDLEPEEVPADQEDQLKSKRSFRRRNISPLDVSRDEEATPKSEQHLKPETPGSYIANTSENYQVLANFKVLTGDSHRDKWLETLLQSIHHMCNSDGSTQREGKTKDNSDAINQGSNNGGAVTTNDCQDKDQKSSESFIWPDAAVPAIVALEKASHDALASDYQKYNQKLRQLVFNLKNRRLARRLLNGELETSKILNMSPNELKVCFRFKQAASGCFLLSVNTVGSTLVRDFDNIDTIRHYLRLDILFCAENCIEFEFSRVEFSYIRLPCDFSIADCMITFGYDPQEGLTADEIAKKEPDESRPTQGTAIDTRFAPVFAIYVTPKTITCTFYGLDLTRDLLFQLECIGCGNSWYASRDECKVEESCPCGGMDLNWKSWIPVLVLSCVSVVIRNPAVHIAMHESDCSSLSYSFSVLILHLLMGQEMKLDLNVKSTEGLSPDTVLLSHQYPSHVKRRHKKINHIGKDEFWALTEDLSKNRFSRFRSSSCKSILSRPNGLEVNVEMRRGSMYQSSKEVKYIKEMSTREGRKKIEISRSSDTSISGSIVDSLCSSDDEDPRKKSSNMYKDSKLNSRSVSRSSACLESHSPDGFIEFCINSDVRDRFSTSTAERDSINSNARNDRVTGSLEKGVPALVKSFSSKVEASHLLSPSKNDCLSKSNSNVQSTPIKKMFNSFTKSKSLTSPGSRKLETSEVKSTGMLNITGSRTYQKSLLNDFSNTEKYSDIISEFINRDIQHSGIASSPVHLHGSLKFENKHGVPFFEFKVNCPEDFLVAKTWRVDNAFNWVYTFHSVDGRKKSSVAGLGSHDCDRVSSMVAQMLVSSNLCSEFNDGAFDNSTLTEFVVYDLANSRPSASLQKDSHCDQDSKTIQPCHVGVGRETFELDEKTTAIKNKLQEKLLFGRVDFDDPKSYPWLCTELHPNLEIAAIVLQIPFHKRESFRHTRKSRSAREHRNLSDHSEIKQRRKSLHEHRGPEQVKVVIPKGNHGLPIDESQGPSCLLDRWRHGGGCDCGGWDMACPLVLLGNPGIQFSEDRSLMESYQTLELFVQGAKESCPTLSMTLVEEGQYTVDFHAQLSTVQAFAICVAILHGTGTFHGAGRQKKQELSQCSSMKMLKDEDGVEILIDSITREEKTVSKSSKPNLRSYVLNPPFSPVARV 1394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele49g0643 1394 SMART mid_6 350 453 IPR003618 GO:0006351
Lele49g0643 1394 ProSiteProfiles TFIIS central domain profile. 317 472 IPR003618 GO:0006351
Lele49g0643 1394 MobiDBLite consensus disorder prediction 791 806 - -
Lele49g0643 1394 Pfam Domain of unknown function (DUF3527) 982 1327 IPR021916 -
Lele49g0643 1394 MobiDBLite consensus disorder prediction 1178 1211 - -
Lele49g0643 1394 SUPERFAMILY Elongation factor TFIIS domain 2 311 444 IPR036575 GO:0006351
Lele49g0643 1394 MobiDBLite consensus disorder prediction 1187 1211 - -
Lele49g0643 1394 MobiDBLite consensus disorder prediction 764 811 - -
Lele49g0643 1394 Pfam Transcription factor S-II (TFIIS), central domain 313 445 IPR003618 GO:0006351
Lele49g0643 1394 Coils Coil 56 86 - -
Lele49g0643 1394 MobiDBLite consensus disorder prediction 1 108 - -
Lele49g0643 1394 Gene3D - 9 181 IPR043151 -
Lele49g0643 1394 Gene3D - 297 446 IPR036575 GO:0006351
Lele49g0643 1394 MobiDBLite consensus disorder prediction 37 75 - -
Lele49g0643 1394 SMART BAH_4 119 215 IPR001025 GO:0003682
Lele49g0643 1394 MobiDBLite consensus disorder prediction 251 285 - -
Lele49g0643 1394 MobiDBLite consensus disorder prediction 349 368 - -
Lele49g0643 1394 ProSiteProfiles BAH domain profile. 119 274 IPR001025 GO:0003682
Lele49g0643 1394 MobiDBLite consensus disorder prediction 241 296 - -
Lele49g0643 1394 MobiDBLite consensus disorder prediction 334 368 - -
Lele49g0643 1394 PANTHER EXPRESSED PROTEIN 666 1394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele49g0643 Lele-ChrLele49 3877476 3888336 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0643 49 3877476 3888336 Lele49g0643 49 3877476 3888336 ECH
Lele49g0643 49 3877476 3888336 Lele51g0661 51 3988298 3991705 hybridization
Lele49g0643 49 3877476 3888336 Lele52g0663 52 4196036 4199625 hybridization