Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g1299 ATGTTTCTGCGCGCGATCGCATGGCCATTGATGGCCAAAGTGAAGCAGACGACGGGGATCGTGGGGCTGGATGTGGTGCCGAACGCGCGAGAGGTGCTGATCGGCCTCTACACCAAAACCTTGAAGGAGATCCAGGCCGTCCCTGAGGATGAAGGCTACCGTAAGGCCGTAGAGAGCTTCACAAGGCAGAGGCTCAACGTTTTCCAGGAAGAGGAGGATTGGGAAGTGATCGAGATGCGCCTTGGCTGTGGCCAGGTCGAGGAGCTCATCGAAGAGGCCCAGGATGAGCTCACACTCATTGGCAAAATGATCGCGTGGAATCCATGGGGTGTATCAGATGATCATGATGTGAAGTGCTTGAGAATGATGCACCAATTCCTAAGCACGTTCCTTACCATCGACCTCCTCCTCTCCCTAGAGAGTTTTTCAAGACGCTGGAGGCTGTTTCTTCTCAACCCAAAAAAGACACTCCTGCGTTCAGCTATGGTGAATCAACCTCAAAGGCATGATGATCTTTTTCTCTCTTCCTCGAGGTTCATCTCCCTTCGCGATACAGCTCGATTCCATATTAGCCTCTCAGGTCAATCGTACTCTACTCAATTATATAAGTCTCTCTTTCTCTCTCTGGTTCTCCTTCTAGACTCTTCCAAATCCTTCTCCCGCAACGCTTGCTTGCCCATGGCTTCCGATCTCGAAGCCAAAGCCAAAGAGGCTTTTGTCGATGACCACTACGAGCTCGCCGTGGACCTCCTCACTCAGGCCATCGCCCTCAGACCTAGCGCCGAGCTCTATGCCGACCGTGCCCAGGCTAACATCAAACTCAGCAACTACACTGTTGATTATGTATTCAACGGAGAAGCTGTTGTTGACGCAAATAAGGCAATTGACTTGAATCCTGAATTAGCGAAGGCATATTTGCGCAAAGGTACTGCGTGTATGAAGCTTGAGGAATATCAGACTGCTAAGGCAGCTCTGATGAAGGGTGCTTCACTGGATCAGGGAGATTCAAGATTCATTACTTTGATCAAAGAGTGTGATGATCTTATTGCAGAGGAAAGTAGAACCATAACTATACAGGAAAAGAACCCTATCTCTGATGCTTCATCAAAAAATATAAGGCTAGAGAGCGACCTTGCCTTAAATCCAGAGAATGACCTTTCAAAACAGGTGGCAGAACCAGCAGCTAAGCCTAAGTACAGGCATGAATTCTACCAGAAGCCTGAAGAAGTTGTTGTAACCATATTTGCCAAGGGAATCCCGCCGGATAGAGTTACTGTGGACTTTGGTGAACAAATACTAAGTGTTCGTATTAATGTTCCTGGTGAAGATGGATATACTTTTCAACCTCGCTTATTTGGAAAGATAATACCTGCAAGAAGCAGATATGAGGTATTGTCTACCAAAATTGAAATTCGCCTTGCAAAAGCAGAATCTTTACATTGGACTTCTCTTGAATTCACTGGGCAAATTACAGTTCAAAGAAAGGTTACTGCTGTCTCAGGTCCAAGACCTACGTACCCATCCTCAAAACCAACAAGAGTAGATTGGGATAAACTTGAAGCTCAGGTTAAGAAAGAGGAGAAAGAAGAAAAACTTGATGGTGATGCGGCGCTGAACAAATTTTTCCGTGAAATATATCAAGATGCGGATGAGGATACAAGAAGAGCAATGAGGAAGTCATTTGTGGAATCTAATGGAACGGTACTGTCTACAAACTGGAAAGAAGTGGGATCAAAGAAGGTAGAGGGAAGTCCTCCTGATGGCATGGAGCTGAAAAAATGGGAATATTAG 1791 0.4618 MFLRAIAWPLMAKVKQTTGIVGLDVVPNAREVLIGLYTKTLKEIQAVPEDEGYRKAVESFTRQRLNVFQEEEDWEVIEMRLGCGQVEELIEEAQDELTLIGKMIAWNPWGVSDDHDVKCLRMMHQFLSTFLTIDLLLSLESFSRRWRLFLLNPKKTLLRSAMVNQPQRHDDLFLSSSRFISLRDTARFHISLSGQSYSTQLYKSLFLSLVLLLDSSKSFSRNACLPMASDLEAKAKEAFVDDHYELAVDLLTQAIALRPSAELYADRAQANIKLSNYTVDYVFNGEAVVDANKAIDLNPELAKAYLRKGTACMKLEEYQTAKAALMKGASLDQGDSRFITLIKECDDLIAEESRTITIQEKNPISDASSKNIRLESDLALNPENDLSKQVAEPAAKPKYRHEFYQKPEEVVVTIFAKGIPPDRVTVDFGEQILSVRINVPGEDGYTFQPRLFGKIIPARSRYEVLSTKIEIRLAKAESLHWTSLEFTGQITVQRKVTAVSGPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRRAMRKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g1299 596 Gene3D Tetratricopeptide repeat domain 213 362 IPR011990 GO:0005515
Lele48g1299 596 SMART tpr_5 228 261 IPR019734 GO:0005515
Lele48g1299 596 SMART tpr_5 302 335 IPR019734 GO:0005515
Lele48g1299 596 Pfam CS domain 400 475 IPR007052 -
Lele48g1299 596 SUPERFAMILY TPR-like 228 345 IPR011990 GO:0005515
Lele48g1299 596 ProSiteProfiles SGS domain profile. 505 596 IPR007699 -
Lele48g1299 596 SUPERFAMILY HSP20-like chaperones 395 491 IPR008978 -
Lele48g1299 596 ProSiteProfiles CS domain profile. 396 485 IPR007052 -
Lele48g1299 596 Pfam ETC complex I subunit conserved region 22 88 IPR006806 GO:0022904
Lele48g1299 596 FunFam Protein SGT1 homolog A 394 498 - -
Lele48g1299 596 Pfam SGS domain 515 594 IPR007699 -
Lele48g1299 596 CDD p23_CS_SGT1_like 402 485 - -
Lele48g1299 596 PANTHER PROTEIN SGT1 HOMOLOG 227 594 IPR044563 GO:0051087
Lele48g1299 596 Gene3D - 397 486 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g1299 Lele-ChrLele48 17241190 17249109 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele48g1299 48 17241190 17249109 Lele48g1299 48 17241190 17249109 ECH
Lele46g0159 46 965807 967295 Lele48g1299 48 17241190 17249109 hybridization