Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0226 ATGGCAATCTCCCCGCACCTTTGCAGTCTCTCCGCTACTCGCACGGACTTCTCCTTGCCATTGCAGGAAAACTTATCTAGGACGGGTTCTTTACGATGCTTGAAGCCTATCTCCGTTAGATGCTCAGCCTATTCTTCATCTTGTTCCGCGGAATTGGAGTCCGATTTCGATGCCAAGGTTTTCCGGAAGAATCTAACCAGGAGTAAGAACTATAATCGTAAAGGGTTTGGGCACAAGGAAGCGACCCTCGAACTTATGAATCGCGAATACACCAGTGACATCATTAAGACCTTAAAGGAAAATGAATACGAGTATACATGGGGTAACGTCACAGTGGCGCTAGCTGAAGCTCTTGGCTTCTGCTGGGGAGTTGAACGGGCTGTCCAAATTGCTTACGAGGCTAGAAAACAGTTTCCTACTGAGACAATCTGGCTTACCAATGAAATCATCCACAACCCAACTGTTAATAAGCGATTAGAAGAGATGAAAGTGCAGAGTATTCCTGTGAATGAAGGAAATAAACAATTTGATGTTGTCAACAAGGGTGATGTTGTGGTTTTGCCTGCTTTTGGAGCTGCAGTGGATGAGATGTTGACTTTGAGTGAGAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTGTAAAGGTCTGGAACACTGTTGAAAAGCACAAGAAAGGAGAGTACACATCAGTCATACATGGTAAATATGCTCATGAGGAAACTATAGCAACCGCATCATTTGCTGGAAAGTATATCATTGTGAAGAATATGGCTGAGGCTGAATATGTTTGTGACTATATTCTTGGTGGTGGACTTAATGGATCCAGCTCAACGAAAGATGCATTTTTAGAGAAATTTAAATTTGCTGTTTCTGAGGGGTTTGACCCAGAGGTTGATTTGATTAAAGTGGGCATTGCGAACCAGACAACAATGCTTAAGGGAGAGACTGAAGAGATTGGTAAACTATTAGAAAGGACTATGATGCGCAAATATGGTGTGGAAAACGTCAATGAACACTTCTTAAGCTTCAACACCATTTGTGATGCTACTCAGGAGAGACAAGATGCTATGTACAAGCTGGTAGAGAAAGATTTGGATCTTATGCTTGTAGTTGGTGGGTGGAACTCAAGCAATACATCACACCTGCAAGAGATAGCTGAGGAACGTGGGATTCCTTCTTACTGGATTGACAGTGAGCTAAGAATTGGTCCAGGAAACAGAATAGCATACAAATTGCTGCATGGTGAGCTGGTGGAGAAAGAAAACTTTCTACCAGAGGGTCCAATAACAATTGGCGTAACTTCTGGTGCATCCACACCCGACAAGGTAGTTGAAGATGTGCTTATTAAGGTGTTTGACTTGAAACGTGAAGAAGCTCTGCAGGTCGCATAA 1398 0.4278 MAISPHLCSLSATRTDFSLPLQENLSRTGSLRCLKPISVRCSAYSSSCSAELESDFDAKVFRKNLTRSKNYNRKGFGHKEATLELMNREYTSDIIKTLKENEYEYTWGNVTVALAEALGFCWGVERAVQIAYEARKQFPTETIWLTNEIIHNPTVNKRLEEMKVQSIPVNEGNKQFDVVNKGDVVVLPAFGAAVDEMLTLSEKNVQIVDTTCPWVVKVWNTVEKHKKGEYTSVIHGKYAHEETIATASFAGKYIIVKNMAEAEYVCDYILGGGLNGSSSTKDAFLEKFKFAVSEGFDPEVDLIKVGIANQTTMLKGETEEIGKLLERTMMRKYGVENVNEHFLSFNTICDATQERQDAMYKLVEKDLDLMLVVGGWNSSNTSHLQEIAEERGIPSYWIDSELRIGPGNRIAYKLLHGELVEKENFLPEGPITIGVTSGASTPDKVVEDVLIKVFDLKREEALQVA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0226 465 Pfam LytB protein 112 451 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lele48g0226 465 CDD lytB_ispH 114 450 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lele48g0226 465 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 110 457 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Lele48g0226 465 Gene3D - 121 211 - -
Lele48g0226 465 Gene3D - 346 464 - -
Lele48g0226 465 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 6 463 - -
Lele48g0226 465 Gene3D - 212 345 - -
Lele48g0226 465 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 112 452 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0226 Lele-ChrLele48 2268298 2271493 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1191 45 22053044 22056304 Lele48g0226 48 2268298 2271493 hybridization
Lele46g1276 46 20088244 20091434 Lele48g0226 48 2268298 2271493 hybridization