Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0157 ATGGCGCAGCCGCTTGTGAAGAAGGACGACGACCGGGACGATGAAGCTGAGTATTCTCCCTTCCTGGGAATCGAGAAGGGTGCTGTCCTTCAGGAAGCCAGGGTTTTCAATGACCCACAACTTGATGCTAGGAGATGTTCACAGGTTATCACAAAACTTTTATACCTATTGAATCAAGGAGAGACATTTACCAAGATTGAAGCCACAGAAGTTTTCTTTGCTGTGACCAAGCTTTTCCAGTCTAGAGATATTGGGTTGAGGAGGATGGTCTACCTGATGATAAAGGAGCTTTCTCCCTCAGCAGATGAGGTTATAATTGTGACAAGTTCTCTCATGAAGGACATGAATAGCAAAACTGATATGTACAGGGCAAATGCTATTCGTGTACTTTGTCGTATTACAGATGGAACCCTCCTTGCCCAAATTGAGAGGTATTTGAAACAAGCAATTGTAGATAAGAATCCGGTTGTTGCAAGTGCAGCCCTAGTTAGTGGCATTCATCTACTCCAGACAAATCCTGAGATTGTGAAAAGGTGGAGCAATGAGGTTCAAGAAGCTGTTCAATCAAGAGCAGCTCTTGTGCAATTTCATGCACTTGCTTTGCTACATCAGATAAGGCAGAATGATCGCCTAGCTGTTAGCAAGTTGGTTACCAGCTTGACAAGGGGAACTGTTCGCTCACCTTTGGCCCAATGCCTTTTGATCCGTTATACCAGTCAGGTTATTCGTGAGTCCAGCAATAATATCCAAACGGGGGACCGTCCGTTTTATGATTTTCTTGAGAGCTGCCTTCGCCACAAATCAGAGATGGTGATTTTTGAAGCAGCCAGAGCAATTACTGAGCTCAATGGTGTAACAAATCGGGAATTAACTCCAGCAATTACTGTTCTTCAGCTCTTCTTAAGTTCTTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACATTGAACAAGGTGGCAATGACACATCCCATGGCTGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAAAACAGAAGCATTGCCACACTTGCAATAACTACGCTGCTGAAGACAGGAAATGAAAACAGTGTGGACCGTCTTATGAAGCAGATTACAAATTTTATGTCAGATATCGCTGATGAGTTCAAAATTGTTGTTGTTGATGCCATAAGATCATTGTGTTTAAAGTTTCCCTTGAAATATCGATCTCTGATGAACTTCTTGAGTAACATTCTTCGGGAGGAAGGTGGATTTGAGTACAAGAAGGCAATTGTAGATTCGATTGTGATTCTCATAAGAGATATCCCAGATGCAAAGGAGAGTGGGTTGCTTCATCTTTGTGAGTTCATTGAAGATTGTGAATTCACCTATTTGTCCACACAGATACTGCACTTCGTGGGAGTCGAAGGACCAAAAACATCTGACCCCAGCAAATATATACGTTACATATATAATAGAGTACATCTTGAGAATGCAACTGTCAGGGCCAGTGCCGTTAGCACTTTGGCAAAGTTTGGTGCCGCAGTTGAATCATTAAAGCCCCGGATATTTGTTCTGCTGAGGCGATGTCTTTTTGACAGTGATGATGAGGTTCGTGACAGGGCAACACTTTATCTTGATACACTTGGAGGAGATGGTACAGTTTTTGAGACTGATAAGGATGCCAAGGATTTCCTCTTTGGTTCTTTTGATGTCCCCCTCGTGAATCTGGAGAATAGTTTGAAAAATTATGAGCCTTCGGAAGAACCTTTTGACATCAATTCTGTGCCTAGGGAGGTTAAGTCTCAGCCACTTGCAGAGAAAAAAGCACCAGGCAAAAAGCCAACTGGTTTGGGTGCTCCTCCTAGTGGTCCTCCATCCACTGCAGATGGATATGAAAGGTTGCTGGCTTCCATTCCTGATTTTGCAAGCTTTGGGAAGCTCTTCAAGTCCTCACCACCTGTGGAACTTACTGAGGCAGAGACAGAATATGCAGTCAATGTTGTTAAGCACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCACAAACACTATACCGGAGCAATTACTGGAAAATGTTACTGTAATTGTAGATGCCTCAGATGCCGAGGAATTCTCCAAGGTTTTCTCCAAGCCTCTCAGATCTCTTCCTTATGACTCACCTGGGCAGACATTTGTGGCTTTTAAGAAGCCAGAAGGGTTGCCTACGGTTGGAAAATTTTCCAACACTCTGAAATTCATCGTTAAAGAGGTTGATACATCCACTGGTGAGGCAGAAGATGATGGTGTGGAAGATGAATACCAGCTGGAGGACTTGGATGTTGCTGCCGCGGATTACATGTTGAAAGTGGGAGTGTCTAATTTTAGAAATGCATGGGAAAACATGGATCCTGATGCTGAGCGAGTGGATGAATATGGGCTTGGCCCAAGAGAGAGCTTGGCTGAAGCTGTAAATACCGTCATCAATCTCCTTGGCATGCAGCCCTGTGAGGGCACAGAGACTGTCCCACCCAATGCAAGGTCACACACGTGTCTATTGTCCGGTGTATTTATAGGGAATGTAAAGGTGCTTGTGCGCTTGTCCTTCGGACTGGATGGTCCAAAGGATGTTGCGATGAAACTGACGGTTAGATCGGAGGATGAAACTGTCAGCGATGCCATTCATGAGATTGTGGCGAGCGGCTAG 2664 0.4418 MAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDIGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLAQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIRESSNNIQTGDRPFYDFLESCLRHKSEMVIFEAARAITELNGVTNRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNENSVDRLMKQITNFMSDIADEFKIVVVDAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFVGVEGPKTSDPSKYIRYIYNRVHLENATVRASAVSTLAKFGAAVESLKPRIFVLLRRCLFDSDDEVRDRATLYLDTLGGDGTVFETDKDAKDFLFGSFDVPLVNLENSLKNYEPSEEPFDINSVPREVKSQPLAEKKAPGKKPTGLGAPPSGPPSTADGYERLLASIPDFASFGKLFKSSPPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASDAEEFSKVFSKPLRSLPYDSPGQTFVAFKKPEGLPTVGKFSNTLKFIVKEVDTSTGEAEDDGVEDEYQLEDLDVAAADYMLKVGVSNFRNAWENMDPDAERVDEYGLGPRESLAEAVNTVINLLGMQPCEGTETVPPNARSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLTVRSEDETVSDAIHEIVASG 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0157 887 PIRSF Gamma-COP 7 885 IPR017106 -
Lele48g0157 887 Pfam Adaptin N terminal region 29 539 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lele48g0157 887 FunFam Coatomer subunit gamma 23 316 - -
Lele48g0157 887 Gene3D Coatomer, gamma subunit, appendage domain 617 768 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Lele48g0157 887 Gene3D - 23 316 IPR011989 -
Lele48g0157 887 SUPERFAMILY ARM repeat 29 564 IPR016024 -
Lele48g0157 887 Pfam Coatomer gamma subunit appendage platform subdomain 623 767 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Lele48g0157 887 Gene3D - 336 553 IPR011989 -
Lele48g0157 887 FunFam Coatomer subunit gamma 333 541 - -
Lele48g0157 887 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 770 884 IPR032154 -
Lele48g0157 887 MobiDBLite consensus disorder prediction 577 622 - -
Lele48g0157 887 SUPERFAMILY Clathrin adaptor appendage domain 618 771 IPR013041 -
Lele48g0157 887 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 772 884 IPR009028 GO:0006886|GO:0016192|GO:0030117
Lele48g0157 887 FunFam Coatomer subunit gamma 769 885 - -
Lele48g0157 887 FunFam Coatomer subunit gamma 615 768 - -
Lele48g0157 887 PANTHER COATOMER SUBUNIT GAMMA 1 885 IPR017106 -
Lele48g0157 887 Gene3D - 769 885 IPR012295 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0157 Lele-ChrLele48 1811833 1818940 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1256 45 22526641 22534023 Lele48g0157 48 1811833 1818940 hybridization
Lele46g1348 46 20545556 20552946 Lele48g0157 48 1811833 1818940 hybridization