Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele48g0141 ATGGTGGTCTACGTGGGCCCACGGATGCGAACCAATGGTTTTGTGGTGAAGGGTGTTTGCAATCCACCCCTTCCTTTGGGCGGTTCGCCAATGGCTTCCTCATGGGTGACCTTGAAACCCAATACTCATTTCCCAAATGGGAGAAAGGGCGATTTCTTTCGCCAGGATAATGGGTTTTTAGGAGAAAAAATCAAGAACCCGAATTGCATCAGTCCCTTTGTAAATCAGTCGACTTCACGTTTGAGACACGAGAAGAGTGTTAAGAAGATCAAACCAGGCGTTGTTTCGGCTGTTCTTACGTCAAATGATACTAAAGAAGCTCTGGTTGATTACCAGCCCTTACAGGTTCCTTCGTTTCTGAGACGAAAGGCTGACCCCAAAAATGTAATTTCCATCATATTGGGTGGTGGACCTGGAAAACAACTCTTTCCACTTACCAAACGAGCTGCAACACCTGCTGTACCTGTTGGTGGATGCTACAAACTTATAGACATCCCAATGAGCAACTGTATTAACAGCGGCATTAACAAAATCTTCGTACTCACCCAATTCAATTCTGCATCCCTGAACCGTCATATCTCACGCACATACTTCGGAAACGGTGTCAGCTTCGGAGATGGATTTGTGGAGGTTCTAGCAGCCACTCAGACACCAGGAGAAGCAGGGAAGAAGTGGTTCCAAGGGACTGCAGATGCTGTGAGACAATTTACATGGGTATTTGAGGATGCCAAGAACACAAACGTTGAGAATGTATTGATCTTGGCAGGAGATCACCTATATAGAATGGATTACATGGACCTTGTGCAGAGCCATGTCGACAGAAATGCTGATATTACAATTTCATGCGTACCAGTGGGTGACAGTCGCGCCCCAGATTATGGTTTGGTCAAGGTAGATGGCAGAGGCCGCATCACCCAATTTTCAGAAAAACCAAAGGGTGCTGATTTGAAAGCAATGCAAGTAGATACCTCTTTTATAGGCTTGTCACACCAAGATGCATTGGAGTCACCGTATATAGCGTCCATGGGGGTTTATGTATTTAAGACAGATGTTCTGCTCAAGCTTTTGAAATGGAGATATCCTACATCCAATGACTTTGGATCTGAAATCATTCCTGCAGCTGTGAGGGAACACAATGTCCAAGCATATTTTTTCGGAGACTACTGGGAAGACATTGGAACGATCAAGTCCTTTTACGATGCTAACCTTGCTCTTACTGAAGAGAATCCAAACTTTGAATTTTATAACCCCAAAACGCCGATTTTCACATCTCCTCGTTTCTTGCCACCAACAAAGATTGACAAGTGTCAGATTGTGGATGCAATTATCTCTCATGGATGTTTCCTTCGAGAATGCACAGTCCGGCACTCCATCGTGGGTGAACGTTCTCGTTTGGATTATGGTGTTGAGCTCCTGGACACCATAATGATGGGAGCAGACCATTACCAAACTGAATCTGAAATCGCGTCTCTGCTAGCAGAAGGGAAGGTCCCAATTGGGATTGGGAGCACTACCAAGATTAGGAACTGTATAATCGACAAGAACGCAAGGATCGGGAAAGATGTGGTGATAATGAATAAAGATGGTGTTGAGGAAGCAGATAGAGCAGATGAAGGATTTTACATTCGATCAGGGATTGCTGTGATCTTGGAGAAGGCCACAATAGAAGATGGCACTGTGATATAA 1686 0.4466 MVVYVGPRMRTNGFVVKGVCNPPLPLGGSPMASSWVTLKPNTHFPNGRKGDFFRQDNGFLGEKIKNPNCISPFVNQSTSRLRHEKSVKKIKPGVVSAVLTSNDTKEALVDYQPLQVPSFLRRKADPKNVISIILGGGPGKQLFPLTKRAATPAVPVGGCYKLIDIPMSNCINSGINKIFVLTQFNSASLNRHISRTYFGNGVSFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFTWVFEDAKNTNVENVLILAGDHLYRMDYMDLVQSHVDRNADITISCVPVGDSRAPDYGLVKVDGRGRITQFSEKPKGADLKAMQVDTSFIGLSHQDALESPYIASMGVYVFKTDVLLKLLKWRYPTSNDFGSEIIPAAVREHNVQAYFFGDYWEDIGTIKSFYDANLALTEENPNFEFYNPKTPIFTSPRFLPPTKIDKCQIVDAIISHGCFLRECTVRHSIVGERSRLDYGVELLDTIMMGADHYQTESEIASLLAEGKVPIGIGSTTKIRNCIIDKNARIGKDVVIMNKDGVEEADRADEGFYIRSGIAVILEKATIEDGTVI 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele48g0141 561 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 225 233 IPR005836 GO:0005978|GO:0008878
Lele48g0141 561 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 135 154 IPR005836 GO:0005978|GO:0008878
Lele48g0141 561 CDD LbH_G1P_AT_C 429 555 - -
Lele48g0141 561 Pfam Nucleotidyl transferase 131 407 IPR005835 GO:0009058|GO:0016779
Lele48g0141 561 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 340 350 IPR005836 GO:0005978|GO:0008878
Lele48g0141 561 SUPERFAMILY Nucleotide-diphospho-sugar transferases 127 523 IPR029044 -
Lele48g0141 561 FunFam Glucose-1-phosphate adenylyltransferase 427 561 - -
Lele48g0141 561 SUPERFAMILY Trimeric LpxA-like enzymes 423 561 IPR011004 -
Lele48g0141 561 FunFam Glucose-1-phosphate adenylyltransferase 112 426 - -
Lele48g0141 561 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 117 426 IPR029044 -
Lele48g0141 561 CDD ADP_Glucose_PP 132 392 - -
Lele48g0141 561 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 75 561 IPR011831 GO:0005978|GO:0008878
Lele48g0141 561 Gene3D Hexapeptide repeat proteins 427 561 - -
Lele48g0141 561 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 129 525 IPR011831 GO:0005978|GO:0008878
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele48g0141 Lele-ChrLele48 1685709 1692298 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1272 45 22631750 22635125 Lele48g0141 48 1685709 1692298 hybridization
Lele46g1364 46 20654312 20657942 Lele48g0141 48 1685709 1692298 hybridization