Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele47g0138 ATGGCTTTCTCATGTGTGACCTTGAAACCCAATACTCATTTCCCAAATGCAAGAAAGGGCGATTTCTTTCGCCAGGATAATGGGTTTTTAGGAGAAACAATCAAGAAGCCTAATTGCATCAGTCCCTTTGTAAATCAGTCGACTTCAACTTTGAGACACCAGAAGAGGGTTAAGAAGATCAAACCCGGCGTTGCTTCTGCTGTTCTTACATCAAATGATACCAAAGAAGCTCTGGTTGATTACCAGACCTTACAGGTTCCTTCGTTTCTGAGACCAAAGGCTGACCCTAAAAATGTAATTTCTATCATATTGGGTGGAGGACCTGGAAAACAACTCTTTCCCCTCACCAAACGAGCTGCAACACCTGCTGTACCTGTTGGTGGATGCTACAAACTTATAGACATCCCAATGAGCAACTGTATTAACAGCGGCATAAACAAAATCTTTGTACTCACTCAATTCAATTCTGCATCTCTGAACCGTCATATCTCACGCACCTACTTTGGAAATTGTGTCAGCTTCGGGGATGGATTTGTGGAGGTTCTAGCAGCTACTCAGACACCTGGAGAAGCAGGGAAGAAATGGTTCCAAGGAACTGCAGATGCTGTGAGACAATTTACATGGGTATTCGAGGATGCCAAGAACGCAAACGTTGAGAATGTATTGATCTTGGCAGGAGATCAACTATATAGAATGGATTACATGGATCTTGTGCAGAGCCATGTCGACAGAAATGCTGATATTACAATTTCATGCGTACCAGTGGGTGACAGTCGCGCCCCAGATTATGGATTGGTCAAGGTAGATGGCAGAGGCCGCATCACCCAATTTTCAGAAAAACCAAAGGATGCTGATTTGAACGCAATGCAAGTAGATACCTCTTTTATCGGGTTGTCGCACCAAGATGCCTTGGAGTCGCCATATATAGCATCCATGGGGGTTTATGTATTTAAGACAGATGTTCTGCTCAAGCTTTTGAAATGGAGATATCCTACATCAAATGACTTTGGATCAGAAATCATTCCTGCTGCCGTGAAGGAACACAGTGTCCAAGCATATTTTTTCAGAGACTACTGGGAAGACATTGGAACGATAAAGTCCTTTTACGATGCTAACCTTGCTCTTACTGAAGAGAATCCAAAGTTTGAATTTTATGATCCCAAAACACCTATTTTCACATCTCCTCGTTTCCTGCCACCGACAAAGATTGACAAGTGTGAGATTGTGGATGCAATTATCTCTCATGGATGCTTCCTTCGAGAATGCACAGTCTGGCACTCCATCGTGGGTGAACGTTCTCGTTTGGATTATGGTGTTGAGCTCCTGGACACCATAATGTTGGGAGCAGACCATTACCAAACTGAATCTGAAATCGCTTCTCTGCTTGCAGAAGGGAAGGTGCCAATTGGGATTGGGAGCAATACAAAGATTAGGAACTGTATAATCGACAAGAACGCGAGGATCGGGAAAGATGTGGTGATAATGAACAAAGATGGTGTCGAAGAAGCAGATAGAGGAGATGAAGGATTTTACATTCGAGCGGGGATCACTGTAATATTGGAGAAGGCCACAATAGAAGACGGCACTGTGATATGA 1596 0.4342 MAFSCVTLKPNTHFPNARKGDFFRQDNGFLGETIKKPNCISPFVNQSTSTLRHQKRVKKIKPGVASAVLTSNDTKEALVDYQTLQVPSFLRPKADPKNVISIILGGGPGKQLFPLTKRAATPAVPVGGCYKLIDIPMSNCINSGINKIFVLTQFNSASLNRHISRTYFGNCVSFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFTWVFEDAKNANVENVLILAGDQLYRMDYMDLVQSHVDRNADITISCVPVGDSRAPDYGLVKVDGRGRITQFSEKPKDADLNAMQVDTSFIGLSHQDALESPYIASMGVYVFKTDVLLKLLKWRYPTSNDFGSEIIPAAVKEHSVQAYFFRDYWEDIGTIKSFYDANLALTEENPKFEFYDPKTPIFTSPRFLPPTKIDKCEIVDAIISHGCFLRECTVWHSIVGERSRLDYGVELLDTIMLGADHYQTESEIASLLAEGKVPIGIGSNTKIRNCIIDKNARIGKDVVIMNKDGVEEADRGDEGFYIRAGITVILEKATIEDGTVI 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele47g0138 531 CDD ADP_Glucose_PP 102 362 - -
Lele47g0138 531 Pfam Nucleotidyl transferase 101 377 IPR005835 GO:0009058|GO:0016779
Lele47g0138 531 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 310 320 IPR005836 GO:0005978|GO:0008878
Lele47g0138 531 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 195 203 IPR005836 GO:0005978|GO:0008878
Lele47g0138 531 SUPERFAMILY Trimeric LpxA-like enzymes 393 531 IPR011004 -
Lele47g0138 531 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 87 396 IPR029044 -
Lele47g0138 531 CDD LbH_G1P_AT_C 399 525 - -
Lele47g0138 531 FunFam Glucose-1-phosphate adenylyltransferase 81 396 - -
Lele47g0138 531 Gene3D Hexapeptide repeat proteins 397 531 - -
Lele47g0138 531 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 45 531 IPR011831 GO:0005978|GO:0008878
Lele47g0138 531 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 105 124 IPR005836 GO:0005978|GO:0008878
Lele47g0138 531 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 99 495 IPR011831 GO:0005978|GO:0008878
Lele47g0138 531 SUPERFAMILY Nucleotide-diphospho-sugar transferases 97 493 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele47g0138 Lele-ChrLele47 979389 982747 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1272 45 22631750 22635125 Lele47g0138 47 979389 982747 hybridization
Lele46g1364 46 20654312 20657942 Lele47g0138 47 979389 982747 hybridization