Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g1203 ATGGAAAAGCACAAAGCCCCGGAGGCCAATAACCCATTTGCTTCTCTCTCGGAGGAGCTCGTCTTCACCATCCTCGACCACCTTCCTTCGAATTCACTATACAAGAAGTCGTTTTCTCTAGTTTGCAAGTCTTTCTACGCAATCGAAGCCAAACATCGCCGAACCATCAGGCCTCTTCGCTCCGAACTCCTTCCTTCGATCTTGAATCGATACCCATTTGTGTCCCATGCTGATCTCTCTCTGTGCCCTCGAGTATCTGATAGTTCCCTCAACTTCTTAGCTAACGCCTACAGTGCTACGCTACGACGGATCGATCTCTCGCGGTCCAGGTTCTTCTCTGCTAATGGGTTGCTGAGTTTGGCTACTAATTGCAAGAATTTGGTGGAGTTAGACTTGTCCAATGCCACTGAGCTGAAAGACGCGGCGGCGTCTGCAGTGGCTCAGGCCAGGAATTTGGAGAAGCTGTGGTTGGCGAGATGTAAGCTAATAACGGACATGGGAATTGGGTGCATAGCAGTTGGGTGCAGGAAATTGAAATTGATTTGCTTGAAGTGGTGTTTGGGTGTGGGGGATTTAGGGGTGGACTTGATCGCAGTCAAGTGTAAGGAACTCCGTAGCTTGGATCTCTCTTACTTGCCTATCACAGGTAAATGTCTGTCATCAATTGTTAAATTGCAATACCTTGAAGATTTGGTCCTTGAAGGATGTTTCGGCATCGATGATGACAGTTTTGATGTCTTCAAACAAGGGTGCACAGCGTTAAAGAAACTTGATATCTCAGGTTGTCAAAACATAAGCCCCATTGGTCTCTCAGCCCTAACAAGCTGTTGTGGATGTATTGAGCAACTTACTTTATCAGATGGTTCTCCTGTGACACTTGCTCTTGCTGATGCTCTGAATAAACTACCCATGCTGCAATCAATCATATTAGATGGCTGCCTGGTTACTTCTTCTGGATTAAGGGCCATCGGAAGTTCATGTATGTCATTAAAAGAGCTGAGTTTGAGAAAATGTTTGGGAGTGACTGATGAAGCTCTCTCATTTCTTGTGTCCAAACACAAGGATTTGAGGAAGCTTGACATTACATGTTGCCGCAAGATAACTCATCTTTCAATTGCCAGCATTGTGAACTCATGCAGAAGTCTCACTTCCCTCAGGATGGAATCATGTACTCTAGTTCCAAGAGAAGCATTTGCGATGATTGGACAGCAATGTGATTCTCTTGAGGAGCTAGACCTTACAGATAATGAAATTGATGATGGAGGTCTTAGGCCCATTTCTCGGTGTTCCAGACTCTCCAGTCTAAAATTAGGAATCTGCCTGAACATAACTGACAAGGGACTTGCCTATGTTGGAAAGTCCTGCTCAAAGTTAAAGGAGCTAGATCTCTACAGGTCCACAGGAATAACAGACTTAGGCATTTCAGCAATTGCTTGCGGTTGCCCTAGGCTGGAGACAATTAATGTTGCTTATTGTACTGACATCACTGATCGTTCCTTAATCTCCCTATCAAAATGCTTAGAGTTGAAAACACTGGAAATCCGTGGATGTCTTCTTGTCACATCTAAGGGTTTAGCAGCTATTGCACCAAACTGTAAGCAACTAAGTCGTCTGGACATAAAAAAGTGTTACAAGATTGATGATAGCGGGATGATTCCACTTGCTTGTTGGTCCCACAATCTAAAACAGATAAATTTGTCATACAGTTCGGTCACAGAAGTAGGGCTATTGTCACTTGCTAGCATCAGTTGCCTACACACCTTTAGTCTTCTGACCTTGCAGGGAGTGACTCCAAGAGGACTTGCTGCTACCTTGTTGGCATTTGGAGGGCTAAGAAAAGTTAAGCTCCATGTTTCGTTGAGACCAACGCTACCTGAGCCTCTTATCAAACACATTGAAGCACGTGGCTGTGTGTTTGAGTGGAGGGATAAAGTGTTCCAGGCTGAGATGGATCCCAAGTGTTGGAAATTACAGTTGGAGGATCTGATGGAAGTCGTTTAA 2001 0.4468 MEKHKAPEANNPFASLSEELVFTILDHLPSNSLYKKSFSLVCKSFYAIEAKHRRTIRPLRSELLPSILNRYPFVSHADLSLCPRVSDSSLNFLANAYSATLRRIDLSRSRFFSANGLLSLATNCKNLVELDLSNATELKDAAASAVAQARNLEKLWLARCKLITDMGIGCIAVGCRKLKLICLKWCLGVGDLGVDLIAVKCKELRSLDLSYLPITGKCLSSIVKLQYLEDLVLEGCFGIDDDSFDVFKQGCTALKKLDISGCQNISPIGLSALTSCCGCIEQLTLSDGSPVTLALADALNKLPMLQSIILDGCLVTSSGLRAIGSSCMSLKELSLRKCLGVTDEALSFLVSKHKDLRKLDITCCRKITHLSIASIVNSCRSLTSLRMESCTLVPREAFAMIGQQCDSLEELDLTDNEIDDGGLRPISRCSRLSSLKLGICLNITDKGLAYVGKSCSKLKELDLYRSTGITDLGISAIACGCPRLETINVAYCTDITDRSLISLSKCLELKTLEIRGCLLVTSKGLAAIAPNCKQLSRLDIKKCYKIDDSGMIPLACWSHNLKQINLSYSSVTEVGLLSLASISCLHTFSLLTLQGVTPRGLAATLLAFGGLRKVKLHVSLRPTLPEPLIKHIEARGCVFEWRDKVFQAEMDPKCWKLQLEDLMEVV 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g1203 666 Gene3D Ribonuclease Inhibitor 394 638 IPR032675 -
Lele40g1203 666 Coils Coil 135 155 - -
Lele40g1203 666 Gene3D Ribonuclease Inhibitor 287 393 IPR032675 -
Lele40g1203 666 Gene3D Ribonuclease Inhibitor 7 286 IPR032675 -
Lele40g1203 666 SMART LRR_CC_2 124 149 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 201 225 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 327 352 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 175 200 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 558 582 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 379 404 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 429 454 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 71 96 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 251 276 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 507 531 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 98 123 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 532 557 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 150 174 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 481 506 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 302 326 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 353 378 IPR006553 -
Lele40g1203 666 SMART LRR_CC_2 455 480 IPR006553 -
Lele40g1203 666 SUPERFAMILY RNI-like 60 314 - -
Lele40g1203 666 PANTHER UNCHARACTERIZED 526 616 - -
Lele40g1203 666 SUPERFAMILY RNI-like 294 548 - -
Lele40g1203 666 FunFam F-box/LRR-repeat protein 3 401 640 - -
Lele40g1203 666 SUPERFAMILY F-box domain 8 57 IPR036047 GO:0005515
Lele40g1203 666 ProSiteProfiles F-box domain profile. 10 59 IPR001810 GO:0005515
Lele40g1203 666 Pfam Leucine Rich repeat 251 273 IPR001611 GO:0005515
Lele40g1203 666 Pfam Leucine Rich repeat 407 427 IPR001611 GO:0005515
Lele40g1203 666 Pfam Leucine Rich repeat 326 349 IPR001611 GO:0005515
Lele40g1203 666 Pfam Leucine Rich repeat 454 478 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g1203 Lele-ChrLele40 21889280 21893362 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1386 37 22629711 22631702 Lele40g1203 40 21889280 21893362 hybridization
Lele38g1261 38 23405000 23409287 Lele40g1203 40 21889280 21893362 hybridization