Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0568 ATGGCTACTGAAAGTCTCATGAGAATGGCAGGGGGAAGCCAAACTAGTAAATGGCTTTACTCAAAGGATATTTCAGCATTTGGATCTTTCTGGAAAAATAAGACAACAGAGGAGCCGGATATTTTCTTGGAGGGACAAAAATTCAGTCGAAGACAAGGAAACTTTATTTCTAGTCGAAGTGGTAGTGCTCCCCCAAGTATGGAGGGCTCAGTTGCAGAAGTTGGAGATATGTTACCTGCCAAGGATTCTAGTCTGATTTCAAATTCAGGAAGCTTGAGCAATGCTCTTGAGGATCACAAGTATGAAGGAGAGCTATATGATGCTTCTAGTGTTGCATGCTGTTCCTTGGAGCTCAACTTGGATCCCAAGCTTCTTTCACAGCACTCACAAAATCAATTTAGCAATCATGAAAAAAAAAAACAAGGCAATGCTGTTTCAGATAATGGTGGCAGGGTTTATCCTTCTACTGCTGAAACTTCCAACAAAAATGGTTCACCAAAGAAAGCTTCAGAAAGCTTGTTCAATCCCAATAACATGCCTAGGCCTGGGAAAAGTGCAGTCCCATTAGCTAGTGTTCACAAAAGCTTGGTGGATTTGATACAGGAAGACTTCCCCCGTACCCCGTCCCCTGTATTTAACCAATCTCATATATCAAGTCAAGCTACAACTGAAGATTCAGTTGATGTTGATGTGCAAGCAATTTCTTCAAGTGTTTCATTGATAGATTTATCAAACCAGTCAGACTCAGCTACATGTTCTACTAGTGTTGTGGAGACAGGCATCCTGAACACTGGTGCTTGTGAGCTGACATCACATGAAGTTTCTCTGTTGAACTTCCGAAGTTTGCAGCATGCTGATGAAACCCAGAACCTGCCAGTGGATCCTAATCCAACATTCAACAAAGATGCTGTGCCGAAGGATTATGTATCAACAGATGGGGCTGTAAATGTGCAGGAACATAAATTGAAAGCCTCTGATTTTCCAGTTGCGAGGTCACAATTTCCTCAAGGCATAAACAATTCACAAAGTTACTTGGGAATGCTTGCTTATAGTAATTCACAATTTTCACCTCTTGGTATACAATCATCATTGCCTTCTACTGGACCTACTGGTCCTTATTATGCAACTCCAACTGCATTCATGGCTTCAGGAAACCCATTTTATCCTAATTTTCAGCCATCCGGTTTTCTCCCTCCACAGTATAGTTTAGTTGGGTATGATTTAGGTTCTACCTCTGCTGCACCATATATAGCTGGATATTCTTCTCAAGGTGACCTACCTCTTCCATTTGAAGCTGCAGGCAGCTCAGGCCTGAATGGTCAGGCTACCAATGCTTCACCAGGAGGTGTTCCACTTGCTTCTGATTTTCAAAGTCGCAGCAAGATTCATGGGCAATATGAATTACCAGTACAGCCTTCATATGTTAATCCAATTAATATGCAATATTATTCCCACACTTCCAGTGATGTGTATCCTGATGTTTTTCAGCAGAATCAATTGTCATCAAGAACACTGACTGGAGGACTGGCTTGTTCTCTACCTCCCCAGCAAGATGCTGCTGTTCCTTCCTATTTAAATGGTCATAAATTTCAATCTTCAGCACATGGTAGCTTGCCCATTCCAAGTACAAAAAATATGGGGATCTCCGGAAGTAGCTATTATGGGAACTCTAATACAGGTGTCATGATGCAATTTCCTCCTTTATCTTGTGGTGGTCCAATTTGTACATCCTCATCAATGGGCAAAACTAACACTCAAGGTGGACAAAATGAGAATATAGCTTGTGCTTCTGTCAGAAATGCAGGATTTTCTTCTGGACAGAGAGGAATTAGGGGTTTTGGTGAAACCAAGCAGCAGTCTTTTCTAGAGGAACTTAAATCCATCAATCCTGAGAAGTTCAAGCTCTCTGATATAGCAGGGAGTATTGTTGAATTCAGTCGATTTATCCAGCTGAAGCTCAAAAACTGCAGTGCTGAAGAGAAGGCATCTGTTTTTGAAGAAATCCTTCCACATTCCTCAAAATTAATGACGGATTTGTTTGGAAATTATGTAATTCAGAAGTTTTTTGAGCATGGAAATGATGATCAGAGAAAAAACCTTGCAGATAAACTTTCTGGACAGATTTTACCATTAAGTTTGCAGATGTATGGCTGTCGTGTTATACAGAAGGCCCTTGAGGTTATTGAATTAGATCAGAAGATACTGTTAGTGCAAGAGCTTCATGGACATGTCATGAGATGTGTGCACGATCAAAATGGGAATCATGTCATACAAAAATGTATAGAATGCATTCCTGTGGACAAAATCCAGTTTATCATATCTGCATTTCAAGGACAAGTTCCAGCTCTTTCTACTCACCCATATGGGTGTCGTGTTATTCAGAGAATCTTGGAGCATTGTTCAGATGAGCAACATATTCAATTTATAGTGGACGAAATTCTGGAATCTGCTTTTGTCCTTGCTCAAAATCAGTATGGCAATTACGTGACTCAGCACTTCCTGAAAAGGGGAAAAACTGAAAGAGGTCAAATTGTGAACAAATTAGCTGGCAAGATTGTACAATTGAGTCAGCATAAGTATGCTTCTAATGTTGTTGAGAAGTGTTTAGAGCATGGTGATGTGACTGAACGAGAGGCCATGATTGCAGAAATAATTGGGCAGCCTGGTGAAAATCATAATTTATTGACAATGATGAAGGACCAGTATGCAAATTATGTGATACAGAAACTTCTTGATATAAGCAATGGCAGGCATCGGGAAATACTTCTCAATCATATAAGAGGTCATATAGATGCTTTGAAGAAATATACATATGGGAAACACATTGTTGCTCGTTATGAACAACTTTTTGGTCCAGCTATTGAGACTGAGATTTGTTGA 2880 0.4017 MATESLMRMAGGSQTSKWLYSKDISAFGSFWKNKTTEEPDIFLEGQKFSRRQGNFISSRSGSAPPSMEGSVAEVGDMLPAKDSSLISNSGSLSNALEDHKYEGELYDASSVACCSLELNLDPKLLSQHSQNQFSNHEKKKQGNAVSDNGGRVYPSTAETSNKNGSPKKASESLFNPNNMPRPGKSAVPLASVHKSLVDLIQEDFPRTPSPVFNQSHISSQATTEDSVDVDVQAISSSVSLIDLSNQSDSATCSTSVVETGILNTGACELTSHEVSLLNFRSLQHADETQNLPVDPNPTFNKDAVPKDYVSTDGAVNVQEHKLKASDFPVARSQFPQGINNSQSYLGMLAYSNSQFSPLGIQSSLPSTGPTGPYYATPTAFMASGNPFYPNFQPSGFLPPQYSLVGYDLGSTSAAPYIAGYSSQGDLPLPFEAAGSSGLNGQATNASPGGVPLASDFQSRSKIHGQYELPVQPSYVNPINMQYYSHTSSDVYPDVFQQNQLSSRTLTGGLACSLPPQQDAAVPSYLNGHKFQSSAHGSLPIPSTKNMGISGSSYYGNSNTGVMMQFPPLSCGGPICTSSSMGKTNTQGGQNENIACASVRNAGFSSGQRGIRGFGETKQQSFLEELKSINPEKFKLSDIAGSIVEFSRFIQLKLKNCSAEEKASVFEEILPHSSKLMTDLFGNYVIQKFFEHGNDDQRKNLADKLSGQILPLSLQMYGCRVIQKALEVIELDQKILLVQELHGHVMRCVHDQNGNHVIQKCIECIPVDKIQFIISAFQGQVPALSTHPYGCRVIQRILEHCSDEQHIQFIVDEILESAFVLAQNQYGNYVTQHFLKRGKTERGQIVNKLAGKIVQLSQHKYASNVVEKCLEHGDVTEREAMIAEIIGQPGENHNLLTMMKDQYANYVIQKLLDISNGRHREILLNHIRGHIDALKKYTYGKHIVARYEQLFGPAIETEIC 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0568 959 Gene3D - 616 953 IPR011989 -
Lele40g0568 959 SUPERFAMILY ARM repeat 632 946 IPR016024 -
Lele40g0568 959 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 605 950 IPR033133 GO:0003723
Lele40g0568 959 CDD Pumilio 632 945 IPR033712 GO:0003723
Lele40g0568 959 ProSiteProfiles Pumilio RNA-binding repeat profile. 739 774 IPR001313 GO:0003723
Lele40g0568 959 ProSiteProfiles Pumilio RNA-binding repeat profile. 847 882 IPR001313 GO:0003723
Lele40g0568 959 MobiDBLite consensus disorder prediction 148 179 - -
Lele40g0568 959 ProSiteProfiles Pumilio RNA-binding repeat profile. 703 738 IPR001313 GO:0003723
Lele40g0568 959 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 423 948 - -
Lele40g0568 959 FunFam Pumilio homolog 1 isoform 2 616 956 - -
Lele40g0568 959 ProSiteProfiles Pumilio RNA-binding repeat profile. 667 702 IPR001313 GO:0003723
Lele40g0568 959 ProSiteProfiles Pumilio RNA-binding repeat profile. 883 924 IPR001313 GO:0003723
Lele40g0568 959 SMART pum_5 739 774 IPR001313 GO:0003723
Lele40g0568 959 SMART pum_5 703 738 IPR001313 GO:0003723
Lele40g0568 959 SMART pum_5 847 882 IPR001313 GO:0003723
Lele40g0568 959 SMART pum_5 889 924 IPR001313 GO:0003723
Lele40g0568 959 SMART pum_5 775 811 IPR001313 GO:0003723
Lele40g0568 959 SMART pum_5 812 846 IPR001313 GO:0003723
Lele40g0568 959 SMART pum_5 667 702 IPR001313 GO:0003723
Lele40g0568 959 Pfam Pumilio-family RNA binding repeat 779 814 IPR001313 GO:0003723
Lele40g0568 959 Pfam Pumilio-family RNA binding repeat 893 926 IPR001313 GO:0003723
Lele40g0568 959 Pfam Pumilio-family RNA binding repeat 852 885 IPR001313 GO:0003723
Lele40g0568 959 Pfam Pumilio-family RNA binding repeat 750 774 IPR001313 GO:0003723
Lele40g0568 959 Pfam Pumilio-family RNA binding repeat 707 741 IPR001313 GO:0003723
Lele40g0568 959 Pfam Pumilio-family RNA binding repeat 646 669 IPR001313 GO:0003723
Lele40g0568 959 Pfam Pumilio-family RNA binding repeat 674 704 IPR001313 GO:0003723
Lele40g0568 959 Pfam Pumilio-family RNA binding repeat 820 845 IPR001313 GO:0003723
Lele40g0568 959 ProSiteProfiles Pumilio RNA-binding repeat profile. 775 811 IPR001313 GO:0003723
Lele40g0568 959 MobiDBLite consensus disorder prediction 130 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0568 Lele-ChrLele40 4847240 4854814 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0568 40 4847240 4854814 Lele40g0568 40 4847240 4854814 ECH
Lele37g0633 37 5315443 5315997 Lele40g0568 40 4847240 4854814 hybridization
Lele38g0599 38 5036985 5046793 Lele40g0568 40 4847240 4854814 hybridization