Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g0599 ATGATGAAGCTCCGAACTGTGTGGCTCTGTATGACCACCGCACCAGTGAAGTTGCAGCCTCCCCACAACTCCTTTCTCCCTTTCTTGAAATGGGGTGGCAAGAATCACACTAACAAGAACCTTCGGTTTCGTCGTCCTGTCTCTGATAAGTCCTCATCATCACAAGGCTTGAAAGGTAAAAAACAGAAAAAATTACCAAGAAATCGAATTCAAGAATTGTATACTCGTGTCAAGAATCCATCTATCAAGAGCACGGGTAGGCTTGCTACTGCAAATCATACGTCTCTTATCCACAGCTCAGATTTGAATACAGCATTACTGCTTTTCCATGATGTGAACCTCAAATCATACGTTTCATTATGGATTGCTACCGAGAGTCTCATGAGAATGGAGGAAGGAAGCCAAACTAGTAAATGGCTTTCCTCAAAGGATATTTCAGCATTTGGATCTTTCTGGAAAAATAAGACAACAGAGGAGCCGGATATTTTCTTGAAGGGACAAAAGTTCAGTCGAGGACAAGGAAACTTTATTTCTAGTCGAAGTGGTAGTGCTCCCCCAAGTATGGAGGGCTCAGTTGCAGCAGTTGGACATATGTTACCTGCGAAGGATTCTAGTCTGATTTCAAATTCAGGAAGCTTGAGCAATGCTTTTGAGGATCACAAGTCTGAAGGAGAGCTATTTGATGCTTCTAGTGTTGCATGTTGTTCCTTGGAGCTCAACTTGGATCCCAAGCTTCTTTCACAGCACTCACGAAGTCAATTTAGCAATCATGAAAAAAAACAAGGCAATGCTGCTTCAGATAATGGTGGCACGGTTTACCCTTCTACTGATGAAACTTCCAACAAAAATGGTTCACCAAAGGAAGCTTCAGAAAGCTTGTTCTATCCCAATAACATGCCTAAGCCTGGGAAAAGTGCAGTCCCATTAGCTAGTGTTCACAAAAGCTTGGTGGATTTGATACAGGAAGACTTCCCCCGTACCCCTTCCCCTGTATTTAACCAATCTCATTTATCAAGTCAAGCTACAACTGAAGATTCAGTTGATGTTGATGTGCAAGCAATTTCTTCAAGTGTTTCATTGATAGATTTATCAAACCAGTCAAACTCAGCTACATGTTCTACTAGTGTTGTGGAGACAGGCATCCTGAACACTGGTGCTTGTGAGCTAACATCACATGAAGTTTCTCTGTTGAACTTCCGAAGTTTGCAGCATGCTGATGAAACCCAAGACCTGCCAGTGGATCCTAATCCAACATGCAACAAAGATGCTGTGCCGAAGGATTATGTATCAGCAGATGGGGCTGTAAATGTGCAGGAGAATAAATTGAAAGCCTCTGATGTTAGAAGAAAAAAACTAGAACAACAACAATCTCCTGGTAGGAATAAGCTAAATCAATCTTTTACTTGTGGCTATGCTTATCAGTTTCCAGTTGCGAGGTCACAATTTCCTCAAGGCATAAACAATTCACAAAGTTACTTGGGAATGCTTGCTTATAGTAATTCACAATTTTCACCTCTTGGTATACAATCATCATTGCCTTCTACCGGACCTACTGGTCCTTATTATGCAACTCCAACTGCATTCATGGCTTCAGGAAACCCATTTTATCCTAATTTTCAGCCATCCGGTTTTCTCCCTCCACAGTATAGTTTAGGTGGGTATGATATAGGTTCTATCTCTGCTGCACCATATATAGCTGGATATTCTTCTCAAGGTGACCTACGTCTTCCATTTGAAGCTGCAGGCAGCCTGAATGGTCAGGCTACCAATGCTTCACCAGGAGGTGTTCCACATGCTTCTGATTTTCAAAGTCGCAGCAAGATTCATGGGCAATATGAATTACCAGTACAACCTTCATATGTTAATCCAATTAATATGCAATATTATTCCCACACTTCCAGTGATGTGGATCCTGCTGCTTTTCAGCAGAATCAATTGTCATCAAGAATACTGACTGGAGGACTGGCTTGTTCTCTACCTCCCCAGCAAGATGCTGCTGTTCCTTCCTATTTAAATGGTCATAAATTTCAATCTTCAGCACATGGTAGCTTGCCCATTCCAAGTACAAAAAATATGGGGATCTCTGGAAGTAGCTATTATGGGAACTCCAATACAGGTGTCATGATGCAATTTCCTCCTTTGTCTTGTGGTGGTCCAATTTGTACATCCTCATCAATGGGAAAAACTAACACTCAAGGTGGACAAAATGAGAATATAGCTTGTGTTTCTGTCAGAAATGCAGGATTTTCTTCGGGACACAGAGGAATTAGGGGTTTTGGTGAAACCAAGCAGCAGTCTTTTCTAGAGGAACTTAAATCCATCAATCCTGAGAAGTTCAAGCTCTCTGATATAGCAGGGCTTATTGTTGAATTCAGTATTGACCAACATGGAAGTCGATTTATCCAGCTGAAGCTCGAAAACTGCAGTGCTGAAGAGAAGGCATCTGTTTTTGAAGAAATCCTTCCACATTCCTCAAAATTAATGACGGATGTGTTTGGCAATTATGTAATTCAGAAGTTTTTTGAGCATGGAAGTGCTGATCAGAGAAAAAAGCTTGCAGATAAACTTTCTGGACAGATTTTACCATTAAGTTTGCAGATGTATGGCTGTCGTGTTATACAGAAGGCCCTTGAGGTTATTGAATTAGATCAGAAGATACTGTTAGTGCAAGAGCTTGATGGACATGTCATGAGATGTGTGCACGATCAAAATGGGAATCATGTCATACAAAAATGTATAGAATGCATTCCTGTGGACAAAATCCAGTTTATCATATCTGCATTTCAAGGACAAGTTCCAGCTCTTTCTACTCACCCATATGGGTGTCGTGTTATTCAGAGAATCTTGGAGCATTGTTCAGATGAGCAAAATATTCAATTTATAGTTGACGAAATTCTGGAATCTGCTTTTGTCCTTGCTCAAAATCAGTATGGCAATTACGTGACTCAGCACGTCCTGAAAAGGGGGAAAAATGAAAGAGGTCAAATTGTGAGCAAATTAGCTGGCAAGATTGTACAATTGAGTCAGCATAAGTATGCTTCTAATGTTGTTGAGAAGTGTTTAGAGCATGGTGATGTGACTGAACGAGAGGCCATGATTGCAGAAATAATTGGACAGCCTGGTGAAAATCATAATTTATTGACAATGATGAAGGACCAGTATGCAAATTATGTGATACAGAAACTTGTTGATTTAAGCAATGGCAGGCATCGGGAAATACTTCTCAATCATATAAGAGATCATATAGATGCTTTGAAGAAATATACATATGGGAAACACATTGTTGCTCGTTATGAACAACTTGTTGGTCCGGGTGAGTAG 3321 0.4062 MMKLRTVWLCMTTAPVKLQPPHNSFLPFLKWGGKNHTNKNLRFRRPVSDKSSSSQGLKGKKQKKLPRNRIQELYTRVKNPSIKSTGRLATANHTSLIHSSDLNTALLLFHDVNLKSYVSLWIATESLMRMEEGSQTSKWLSSKDISAFGSFWKNKTTEEPDIFLKGQKFSRGQGNFISSRSGSAPPSMEGSVAAVGHMLPAKDSSLISNSGSLSNAFEDHKSEGELFDASSVACCSLELNLDPKLLSQHSRSQFSNHEKKQGNAASDNGGTVYPSTDETSNKNGSPKEASESLFYPNNMPKPGKSAVPLASVHKSLVDLIQEDFPRTPSPVFNQSHLSSQATTEDSVDVDVQAISSSVSLIDLSNQSNSATCSTSVVETGILNTGACELTSHEVSLLNFRSLQHADETQDLPVDPNPTCNKDAVPKDYVSADGAVNVQENKLKASDVRRKKLEQQQSPGRNKLNQSFTCGYAYQFPVARSQFPQGINNSQSYLGMLAYSNSQFSPLGIQSSLPSTGPTGPYYATPTAFMASGNPFYPNFQPSGFLPPQYSLGGYDIGSISAAPYIAGYSSQGDLRLPFEAAGSLNGQATNASPGGVPHASDFQSRSKIHGQYELPVQPSYVNPINMQYYSHTSSDVDPAAFQQNQLSSRILTGGLACSLPPQQDAAVPSYLNGHKFQSSAHGSLPIPSTKNMGISGSSYYGNSNTGVMMQFPPLSCGGPICTSSSMGKTNTQGGQNENIACVSVRNAGFSSGHRGIRGFGETKQQSFLEELKSINPEKFKLSDIAGLIVEFSIDQHGSRFIQLKLENCSAEEKASVFEEILPHSSKLMTDVFGNYVIQKFFEHGSADQRKKLADKLSGQILPLSLQMYGCRVIQKALEVIELDQKILLVQELDGHVMRCVHDQNGNHVIQKCIECIPVDKIQFIISAFQGQVPALSTHPYGCRVIQRILEHCSDEQNIQFIVDEILESAFVLAQNQYGNYVTQHVLKRGKNERGQIVSKLAGKIVQLSQHKYASNVVEKCLEHGDVTEREAMIAEIIGQPGENHNLLTMMKDQYANYVIQKLVDLSNGRHREILLNHIRDHIDALKKYTYGKHIVARYEQLVGPGE 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g0599 1106 CDD Pumilio 778 1097 IPR033712 GO:0003723
Lele38g0599 1106 ProSiteProfiles Pumilio RNA-binding repeat profile. 927 963 IPR001313 GO:0003723
Lele38g0599 1106 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 579 1100 - -
Lele38g0599 1106 ProSiteProfiles Pumilio RNA-binding repeat profile. 783 818 IPR001313 GO:0003723
Lele38g0599 1106 MobiDBLite consensus disorder prediction 442 456 - -
Lele38g0599 1106 MobiDBLite consensus disorder prediction 439 461 - -
Lele38g0599 1106 ProSiteProfiles Pumilio RNA-binding repeat profile. 999 1034 IPR001313 GO:0003723
Lele38g0599 1106 Gene3D - 762 1102 IPR011989 -
Lele38g0599 1106 MobiDBLite consensus disorder prediction 250 292 - -
Lele38g0599 1106 ProSiteProfiles Pumilio RNA-binding repeat profile. 1035 1076 IPR001313 GO:0003723
Lele38g0599 1106 ProSiteProfiles Pumilio RNA-binding repeat profile. 855 890 IPR001313 GO:0003723
Lele38g0599 1106 MobiDBLite consensus disorder prediction 250 300 - -
Lele38g0599 1106 FunFam Pumilio homolog 1 isoform 2 762 1104 - -
Lele38g0599 1106 ProSiteProfiles Pumilio RNA-binding repeat profile. 891 926 IPR001313 GO:0003723
Lele38g0599 1106 SMART pum_5 819 854 IPR001313 GO:0003723
Lele38g0599 1106 SMART pum_5 891 926 IPR001313 GO:0003723
Lele38g0599 1106 SMART pum_5 783 818 IPR001313 GO:0003723
Lele38g0599 1106 SMART pum_5 1041 1076 IPR001313 GO:0003723
Lele38g0599 1106 SMART pum_5 964 998 IPR001313 GO:0003723
Lele38g0599 1106 SMART pum_5 927 963 IPR001313 GO:0003723
Lele38g0599 1106 SMART pum_5 855 890 IPR001313 GO:0003723
Lele38g0599 1106 SMART pum_5 999 1034 IPR001313 GO:0003723
Lele38g0599 1106 MobiDBLite consensus disorder prediction 45 65 - -
Lele38g0599 1106 SUPERFAMILY ARM repeat 778 1098 IPR016024 -
Lele38g0599 1106 Coils Coil 435 455 - -
Lele38g0599 1106 ProSiteProfiles Pumilio RNA-binding repeat profile. 819 854 IPR001313 GO:0003723
Lele38g0599 1106 Pfam Pumilio-family RNA binding repeat 1045 1078 IPR001313 GO:0003723
Lele38g0599 1106 Pfam Pumilio-family RNA binding repeat 972 998 IPR001313 GO:0003723
Lele38g0599 1106 Pfam Pumilio-family RNA binding repeat 859 892 IPR001313 GO:0003723
Lele38g0599 1106 Pfam Pumilio-family RNA binding repeat 931 966 IPR001313 GO:0003723
Lele38g0599 1106 Pfam Pumilio-family RNA binding repeat 788 821 IPR001313 GO:0003723
Lele38g0599 1106 Pfam Pumilio-family RNA binding repeat 1004 1037 IPR001313 GO:0003723
Lele38g0599 1106 Pfam Pumilio-family RNA binding repeat 902 926 IPR001313 GO:0003723
Lele38g0599 1106 Pfam Pumilio-family RNA binding repeat 826 856 IPR001313 GO:0003723
Lele38g0599 1106 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 763 1102 IPR033133 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g0599 Lele-ChrLele38 5036985 5046793 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0599 38 5036985 5046793 Lele38g0599 38 5036985 5046793 ECH
Lele38g0599 38 5036985 5046793 Lele39g0791 39 16965224 16965757 hybridization
Lele38g0599 38 5036985 5046793 Lele40g0568 40 4847240 4854814 hybridization