Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0292 ATGAACGGTGGCGATGAGGTAGTCGGAGCTCCGGCGGGTCCAACGCAGCCGCTGGAGTGGAAATTCTCTCAGGTTTTCGGCGAACGTGCGGCTGGCGAGGAAGTTCAGGAAGTGGACATAATTTCTGCCATTGAATTTGACAAGTCTGGTGAACATCTAGCAACTGGTGATCGTGGTGGTCGGGTTGTTCTCTTTGAGAGGACAGATACAAAAGATCATGGCGGATCAAGACGGGATTTGGAGGGGATGGACTATCCTCTAAGTAGGCATCCTGAATTCCGTTACAAAACGGAGTTTCAGAGTCATGAACCTGAGTTTGACTATCTTAAGAGCTTGGAAATAGAGGAGAAAATCAACAAAATTAGATGGTGCCAATCCGCTAATGGTGCCCTATTTCTTCTATCCACAAATGATAAAACCATAAAGTTTTGGAAGGTCCAGGAAAAGAAGATCAAGAAACTTTCTGAAATGAATGTTGACCCTTCAAAAGCTATGGGAAATGGCTGTGCTTCTAGTTCCAGCAATTCAACTAATCCTAGGACATATCTTGCCAATGGAGGATCTATGGATAATTCATGCAACCATCTAAGCGATGACTTCACATTGCCATCTGGGGGCATTCCCTTATTACGATTACCTGTGGTAGTAACCAGCCATGAGACCAGCCTGGTGGCTAGATGTCGAAGAGTATATGCCCATGCTCATGATTATCATATCAATTCTATTTCAAATAACAGTGATGGTGAAACTTTCATATCAGCTGATGATTTGCGAATAAATCTTTGGAACCTGGAAATCAGCAATCAAAGTTTTAATATAGTTGATGTCAAGCCTGTGAACATGGAAGATCTGACTGAGGTTATAACATCAGCAGAGTTCCATCCTATGCATTGCAATACGTTGGCATACAGCAGTTCAAAGGGTTCAATACGACTTGTTGACTTACGGCAATCCGCATTATGTGATTCTCATGCTAAACTGTTTGAGGAACAGGAGGCCCCTGGGTCAAGATCATTTTTTACAGAGATTATTGCTTCTATCTCAGACATAAAATTTTCAAAGGACGGAAGATACATTCTTAGCCGTGATTACATGACTCTAAAGTTATGGGACATTAATATGGATTCTGGTCCAGTTGCAGCTTTCCAGGTTCATGAGTATCTAAGACCCAAGTTATGTGATTTATATGAAAATGATTCAATTTTTGATAAGTTCGAGTGTTGTCTAAGTGGCGACGGATTACGTGTTGCAACTGGTTCTTACAGTAACCTTTTCCGTGTCTTTGGTTGCACCCCGGGAAGTACTGAAGCTACAACTTTGGAAGTCAGTAAAAATCCAATGAGGCGACAAGTTCCAACTCCTTCAAGGCCTTCGAGGTCACTTGGGAGTAGTTTAACGCGGGCTGTAAGACGAGGAGCAGAAAGTGCCGGTGTTGATGCAAATGGGAATTCTTTTGATTTTACAACAAAGTTACTGCACCTAGCATGGCACCCAACTGAAAATTCAATTGCTTGTGCTGCTGCAAATAGCTTGTACATGTACTATGCATAA 1551 0.4236 MNGGDEVVGAPAGPTQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGEHLATGDRGGRVVLFERTDTKDHGGSRRDLEGMDYPLSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANGALFLLSTNDKTIKFWKVQEKKIKKLSEMNVDPSKAMGNGCASSSSNSTNPRTYLANGGSMDNSCNHLSDDFTLPSGGIPLLRLPVVVTSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPVNMEDLTEVITSAEFHPMHCNTLAYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVAAFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTPGSTEATTLEVSKNPMRRQVPTPSRPSRSLGSSLTRAVRRGAESAGVDANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0292 516 Gene3D - 35 194 IPR015943 GO:0005515
Lele40g0292 516 MobiDBLite consensus disorder prediction 444 464 - -
Lele40g0292 516 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 233 247 IPR018067 -
Lele40g0292 516 PIRSF PPA2_B55 10 516 IPR000009 GO:0000159|GO:0019888
Lele40g0292 516 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 105 119 IPR018067 -
Lele40g0292 516 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 36 197 - -
Lele40g0292 516 Pfam WD domain, G-beta repeat 227 263 IPR001680 GO:0005515
Lele40g0292 516 Pfam WD domain, G-beta repeat 346 371 IPR001680 GO:0005515
Lele40g0292 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 376 401 IPR000009 GO:0000159|GO:0019888
Lele40g0292 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 92 120 IPR000009 GO:0000159|GO:0019888
Lele40g0292 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 485 514 IPR000009 GO:0000159|GO:0019888
Lele40g0292 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 348 375 IPR000009 GO:0000159|GO:0019888
Lele40g0292 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 45 65 IPR000009 GO:0000159|GO:0019888
Lele40g0292 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 235 262 IPR000009 GO:0000159|GO:0019888
Lele40g0292 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 291 319 IPR000009 GO:0000159|GO:0019888
Lele40g0292 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 402 428 IPR000009 GO:0000159|GO:0019888
Lele40g0292 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 263 290 IPR000009 GO:0000159|GO:0019888
Lele40g0292 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Lele40g0292 516 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 320 347 IPR000009 GO:0000159|GO:0019888
Lele40g0292 516 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 16 516 IPR000009 GO:0000159|GO:0019888
Lele40g0292 516 Gene3D - 323 511 IPR015943 GO:0005515
Lele40g0292 516 Gene3D - 221 322 IPR015943 GO:0005515
Lele40g0292 516 SMART WD40_4 31 66 IPR001680 GO:0005515
Lele40g0292 516 SMART WD40_4 275 314 IPR001680 GO:0005515
Lele40g0292 516 SMART WD40_4 224 263 IPR001680 GO:0005515
Lele40g0292 516 SMART WD40_4 105 145 IPR001680 GO:0005515
Lele40g0292 516 SMART WD40_4 333 371 IPR001680 GO:0005515
Lele40g0292 516 SUPERFAMILY WD40 repeat-like 39 508 IPR036322 GO:0005515
Lele40g0292 516 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 209 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0292 Lele-ChrLele40 2361179 2368748 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1094 39 19510644 19518054 Lele40g0292 40 2361179 2368748 ECH
Lele40g0292 40 2361179 2368748 Lele40g0292 40 2361179 2368748 ECH
Lele37g0329 37 2767506 2774722 Lele40g0292 40 2361179 2368748 hybridization
Lele38g0314 38 2469228 2476547 Lele40g0292 40 2361179 2368748 hybridization