Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele40g0219 ATGACGGTTTCTACTATAGCTTTATGCGCTAGCCCACCGAGCAGTGTGTGTTCCACTGCGCACCCTTGCCATATCAACGCCCATGCATCATACGATTTCGACTTGGGTTCGCGATCGTCGTCGTCTTCTTCTTCCACGACGGCGTCTACATCTCAGAAACCAGGAATGAGTGGCCTCTCGTGTTTATTCTCTTCGCCGACGGTGAAGCCCGTTCCCCTGTCGAGCTTTCCCGTTGGCGGAGAGGAACTGGGTCCTTTGTCTGAGTTAAAGGAATTGAGCAGCTCCTTCTCCTATTCGCCGAGCAAATTTGGTGGGTCTTCTTGGAAAAGGGATCAGAGCCCTGTTTCGGTTTTCCAAGGACCCATTTCATGTAGCATCAGCAGCGTTTCTGGTTCCGCAAGGAGTTCCCCAATGAGGATCGGTGACGATAGCTCGATTCGATGTAGGGACAGTGGGTTGCTGGATGGCTTCGTGAGAAATGCATTAGGTTCATGCTTGGATTACAATTCGCCAAGATTCGAGCTGCGTGGTGGTGACATAGATTTGGTTTCTTCATCTTCCATAGCGGATGAATTGACCTTCAATTTAGAGGATTCTTTTGTGGGGGGATCTTTCGAGCCGTACGCTAGACAATTGCTTGTGGGTGCCCAGTTGAAGCATAAGATCTTTTGTGAAGAATTCGTTATTAAGGCTTTCTATGAAGCCGAGAAAGCGCACAGAGGGCAGATGCGAGCTTCTGGTGATCCATATTTGCGGCATTGTGTCGAAACAGCGGTTCTGCTTGCTTTGATTGGTGCCAATTCCACAGTTGTGGCTGCTGGGCTTTTGCACGACTCACTTGATGATTCTTTTCTGACTTACGATTACATCTTGGGGCTTTTTGGCGCTGGGGTTGCTGATTTAGTTGAGGGGGTTTCTAAGCTAAGTCACTTGAGCAAGCTTGCACGAGAGAATAATACGGCATGCAAATCAGTTGAGGCAGATCGGCTGCATACCGTGTTCCTTGCCATGGTTGATGCAAGAGCTGTTCTCATCAAATTGGCAGATCGATTACATAATATGATGACACTAGATGCATTGCCAGTGGCCAAACAGCAAAGGTTTGCGAAGGAGACCTTGGAGATTTTCGCACCTTTGGCCAATCGTTTGGGAATATCTAGTTGGAAGGAGCAATTGGAGAACTTGTGTTTTAAGCATCTCAATCCAGAACAGCACCAGGAGATTTCGTCAAAGCTTGTGGAATCATATGATGATGCAATGATTACTTATGCTATAGAGAAATTAGAGCAAGCACTTAAAGATGAAGGCATTTCTTACCATGTCCTTTCTGGGCGGCACAAGAGCCTGTATAGCATATATTGCAAAATGCTGAAGAAGAAGCTATGCATGAATGACATTCATGATATTTATGGGCTGCGGTTGATTGTAGACAAGGAGGAGGACTGTTATAAAGCCTTGACAGTTGTTCACTGGTTATGGTCCGAGGTACCCGGAAAATTCAAGGACTACATTCGCCATCCTAAGTTCAACGGGTACAAATCTCTGCACACTGTGGTGATGGGCGAAGGAGAGGTTCCCCTTGAAGTACAAATCCGGACAAAAGAGATGCATCTGCAAGCAGAATTCGGATTCGCGGCTCATTGGAGATACAAGGAAGGCGATTGCCAGCATTCTTCATTCGTGCTTCAGATGGTCGAGTGGGCCCGATGGGTTGTTACCTGGCATTGTGAGACAATGAACCAAGATTGTTCAGCTGTTGGATGTGCCGATTCGGTCAAGCCACCATGCAAGTTCCCTTCTCATGCTGACAATTGTCCACATTCTTACAAACCTCATTGTGGTCACGATGGCCCTGTGTTCATCATCTTGATTGAGAACGATAAGATGTCTGTGCAGGAGTTTCCGGCAAACTCAACGGTGATGGACTTGCTTGAGAGAGCCGGGCGAGGGAGCTCTAAGTGGACCCCATACAGATTTCCATTGAAGGAAGAACTAAGGCCAAGGCTGAATTATGAGCCAGTGAAGGATCCAAAGTTAGAGTTGAATATGGGAGATGTGGTGGAGCTGACGCCTGCAATACCTGATAAGTCTCTGACAGAGTATAGGGAAGAAATCCAGAGAATGTATAATAGGGGGCTAACTGTATCTGCTTCAACTCCCATGGTTGGCTCAAGAAGCTGA 2181 0.4713 MTVSTIALCASPPSSVCSTAHPCHINAHASYDFDLGSRSSSSSSSTTASTSQKPGMSGLSCLFSSPTVKPVPLSSFPVGGEELGPLSELKELSSSFSYSPSKFGGSSWKRDQSPVSVFQGPISCSISSVSGSARSSPMRIGDDSSIRCRDSGLLDGFVRNALGSCLDYNSPRFELRGGDIDLVSSSSIADELTFNLEDSFVGGSFEPYARQLLVGAQLKHKIFCEEFVIKAFYEAEKAHRGQMRASGDPYLRHCVETAVLLALIGANSTVVAAGLLHDSLDDSFLTYDYILGLFGAGVADLVEGVSKLSHLSKLARENNTACKSVEADRLHTVFLAMVDARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPEQHQEISSKLVESYDDAMITYAIEKLEQALKDEGISYHVLSGRHKSLYSIYCKMLKKKLCMNDIHDIYGLRLIVDKEEDCYKALTVVHWLWSEVPGKFKDYIRHPKFNGYKSLHTVVMGEGEVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVVTWHCETMNQDCSAVGCADSVKPPCKFPSHADNCPHSYKPHCGHDGPVFIILIENDKMSVQEFPANSTVMDLLERAGRGSSKWTPYRFPLKEELRPRLNYEPVKDPKLELNMGDVVELTPAIPDKSLTEYREEIQRMYNRGLTVSASTPMVGSRS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele40g0219 726 Gene3D Beta Polymerase, domain 2 402 534 IPR043519 -
Lele40g0219 726 CDD HDc 248 376 IPR003607 -
Lele40g0219 726 SMART RelA_SpoT_2 444 554 IPR007685 GO:0015969
Lele40g0219 726 SUPERFAMILY HD-domain/PDEase-like 212 401 - -
Lele40g0219 726 SMART hd_13 246 363 IPR003607 -
Lele40g0219 726 ProSiteProfiles S4 RNA-binding domain profile. 668 704 - -
Lele40g0219 726 FunFam GTP pyrophosphokinase RelA 211 401 - -
Lele40g0219 726 FunFam GTP pyrophosphokinase RelA 402 534 - -
Lele40g0219 726 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 91 696 - -
Lele40g0219 726 CDD NT_Rel-Spo_like 423 542 IPR007685 GO:0015969
Lele40g0219 726 Pfam Region found in RelA / SpoT proteins 444 553 IPR007685 GO:0015969
Lele40g0219 726 ProSiteProfiles HD domain profile. 250 354 IPR006674 -
Lele40g0219 726 SUPERFAMILY Nucleotidyltransferase 402 574 IPR043519 -
Lele40g0219 726 Gene3D Hypothetical protein af1432 215 401 - -
Lele40g0219 726 Pfam HD domain 233 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele40g0219 Lele-ChrLele40 1709574 1712502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele40g0219 243 553 EF-hand Containing Proteins AT3G17470 29.129 3.25e-35 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele40g0219 40 1709574 1712502 Lele40g0219 40 1709574 1712502 ECH
Lele37g0233 37 1812144 1815082 Lele40g0219 40 1709574 1712502 hybridization
Lele38g0232 38 1831145 1834098 Lele40g0219 40 1709574 1712502 hybridization