Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1183 ATGGCTACTGATTCAGCAGTGGTTGTCCATCTGAGAGCCACCGGTGATGCTCCTATACTCAAGCAAGCGAAATTTAAGATTCCTGGGACTGATAAATTTGCTAAAGTGATAGACTTTCTTCGCCGGCAACTCCACAGGGAGACATTGTTTGTATATGTGAATAGTGCTTTCTCGCCAAACCCAGATGAATCAGTTATTGACTTGTATAATAATTTTGGGATCGATGGCAAATTGGTGGTCAACTACGCCTGTTCCATGGCATGGGGCTAA 270 0.437 MATDSAVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRETLFVYVNSAFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1183 89 Pfam Ubiquitin-like autophagy protein Apg12 7 89 IPR007242 GO:0000045|GO:0005737
Lele39g1183 89 FunFam Ubiquitin-like protein ATG12 1 89 - -
Lele39g1183 89 CDD Ubl_ATG12 7 88 - -
Lele39g1183 89 PANTHER AUTOPHAGY PROTEIN 12 4 89 IPR007242 GO:0000045|GO:0005737
Lele39g1183 89 SUPERFAMILY Ubiquitin-like 6 88 IPR029071 -
Lele39g1183 89 Gene3D - 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1183 Lele-ChrLele39 20562854 20565197 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g1183 39 20562854 20565197 Lele39g1183 39 20562854 20565197 ECH
Lele38g0241 38 1901604 1904007 Lele39g1183 39 20562854 20565197 hybridization