Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1162 ATGGGAACTTTTCATGCTGAAGAAGCAAGTTTGACCCTTCTTTATGAAGCATCACGCCGAGGATCTGTATCAACTTTGAACTCACTTTTACAACAAGAACCATTAATCCTTCACAAAATCTCTCAAAGTGGCTTCAGTGAAACTCCTTTGCACATATCAGCTTTGCTAGGTCACCTTGAATTCACCAAGGCACTTGTCACATACAATCCCAAACTAGCCATTGAGGTTGACTCTTCGCAGAACACACCCCTACACCTGGCATCTGCAGAAGGCCACGTCGACATCGTGAAGGAACTGCTTCAAGTTAACAACAAGGCATGCTTGTTTTCTAATGAAGAGGGCAAAGTTCCTTTGCACTATGGAGTTATGACAGGGAGAATACAGGCTGTGAGAGAGTTGGTGAAAGCGAAGCCTGAGTCTTTGAGCTTTCTTGATAATGGGAACACTGTGTTTCACTTGTGTGTGTTATACAATCGTTTGGAGACTCTCAAAGCTTTAGTGGAATTGGAAATTGCCACTTCTGGGAAGCTTCTGAACTTCACAAGTTCTGATGAAGTCGGCAACACTGTTTTCCATTTAGCAGTCACGTCCAAGCAAGTTGAGACTATAAGGTACCTGCTATCAATCCCAAAAGCTATAGAAATGGCAAGCTTGAAGAACGATATGGGTCTTACTGCCTATGACATCCTTAAACGTAGTCCAAAGGATTTCAAAACCCTAGAAATACAAGTCATGCTGATGGAATATTCTGAAATCAGAAGTGATGAAAAGAACGGAATCCATAATCATTCACACTCGCATGTGTATCACTCTCACAACCCTAGCCCTTGCCTACTTAAGTGCCTTTTTAATGGTGATGCCACGGATGTTAATTATGCATTTGAATTGGTCAAGTGGAGACACGAGAGGTCGGCCCATAAGAATTCCGCTGGACTTCAAATGCCTCAAAATACAAGTTATATTGATGAACTCTGGAATCAAAAGTGA 987 0.4205 MGTFHAEEASLTLLYEASRRGSVSTLNSLLQQEPLILHKISQSGFSETPLHISALLGHLEFTKALVTYNPKLAIEVDSSQNTPLHLASAEGHVDIVKELLQVNNKACLFSNEEGKVPLHYGVMTGRIQAVRELVKAKPESLSFLDNGNTVFHLCVLYNRLETLKALVELEIATSGKLLNFTSSDEVGNTVFHLAVTSKQVETIRYLLSIPKAIEMASLKNDMGLTAYDILKRSPKDFKTLEIQVMLMEYSEIRSDEKNGIHNHSHSHVYHSHNPSPCLLKCLFNGDATDVNYAFELVKWRHERSAHKNSAGLQMPQNTSYIDELWNQK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1162 328 SUPERFAMILY Ankyrin repeat 10 232 IPR036770 -
Lele39g1162 328 ProSiteProfiles Ankyrin repeat region circular profile. 79 101 - -
Lele39g1162 328 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 8 258 - -
Lele39g1162 328 Gene3D - 4 258 IPR036770 -
Lele39g1162 328 ProSiteProfiles Ankyrin repeat profile. 79 101 IPR002110 GO:0005515
Lele39g1162 328 SMART ANK_2a 113 143 IPR002110 GO:0005515
Lele39g1162 328 SMART ANK_2a 79 108 IPR002110 GO:0005515
Lele39g1162 328 SMART ANK_2a 146 175 IPR002110 GO:0005515
Lele39g1162 328 SMART ANK_2a 9 39 IPR002110 GO:0005515
Lele39g1162 328 SMART ANK_2a 45 74 IPR002110 GO:0005515
Lele39g1162 328 SMART ANK_2a 186 215 IPR002110 GO:0005515
Lele39g1162 328 Pfam Ankyrin repeats (3 copies) 118 207 IPR002110 GO:0005515
Lele39g1162 328 Pfam Ankyrin repeats (3 copies) 14 101 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1162 Lele-ChrLele39 20275719 20278310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1162 14 231 Miscellaneous Gene Families AT5G54620 30.973 3.58e-23 97.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0264 37 2131045 2134341 Lele39g1162 39 20275719 20278310 hybridization