Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1153 ATGTTCAACTCAGGGCTGACGAACTTGGTGCCGGATATTCTGACCGGCGGCCACAACAAGAGCCAGATCAAAGGCACGGTGGTGCTCATGACGAAGAAGGTTCTTGACTTCAACAATCTCAACCTCAACGTCGGCATCAACTTAGGTGTCGGCGTGGCCGGCTCCGTCTTGGACGGCCTCCGCCAGTTCTTGGGCGGCGCTGTTTCCTTTCAGCTCATCAGTGCCAATAAAACTGATACTGGAAATGGGCTGGGAAGACTTGGGAAGGCGGCATCGTTGGAAGGGTTCGTGACCACTTTGCCAACACTGTTGGAAGGACAGAGCGCCTTCAGTGTTCACTTCGATTACAGTCACGACTTCGGAGTTCCTGGAGCCTTCGTGATCAGGAACAATCTTCTCACCGAATTCTATCTTGTCAGCGTCACGCTTGATGATATTCCAAATCATGGAACCGTCCACTTTGTTTGCAACTCCTGGATCTACCCTGCCAGCAAATACAAAAGCGATCGCATCTTCTTCTCCAACAAGGCATATGTTCCAAGCAAAACACCAGCAGCTTTGGTCAAATACAGAGAACAAGAGCTCATTACTTTAAGAGGAGATGGATTCGCTGAGCTCCAGGAACACGATAGAGTCTATGATTATGCTACCTACAATGACTTGGGCTGGCCAGATCTCAGCAAGAGCTTTGTACGTCCTACTATTGGAGGCTCTTCCGAGTATCCTTACCCTCGTAGAGGAAGAACTAGCAGGCCACCCTCTAAATCAGATCCTAACACTGAGAGTAGACTTCTTCCTGGAGTTCAGAACTTCGATATCTATGTTCCAAGGGATGAACGATTTGGTCACGTTAAGTTGTCGGACTTTCTGACCTATTTTATAAAATCTATTTCTCAAGATTTGAGGCCCGCGTTGGAATCTGCATTCAATTTCTTGTCCAATGAGTTCGAGAGCTTTGATGAAGTACGCGAACTATATGAAGGTGGATTTAAACTGCCACAGGATGTGCTTAAGAATATCAGCCAAAAAATGCCTGTACCTATGCTCAAGGAAATCTTCCGAACTGATGGCGAACAATTTCTAAGATATCCTACTCCTAAAGTTATTAAAGAAAACAAGTCTGGATGGATGACTGATGAAGAATTTGCAAGAGAAATGTTGGCTGGTGTGAATCCAGGTGTAATCCGGGCTCTCCAAGAGTTCCCCCCAAAGAGTACGCTGGATGTTAGGGTCTATGGTGATCAAACGAGCAAGATAACCAAAGAGCAATTGGAGCAAAATATGAATGGAATTACAGTGGATGAGGCACTCGAATGCAAGAGATTGTTCATATTAGATCACCATGACGCATTCATGCCATATCTGAGGAAGATAAATGAAACTTCTAAAAAAGCTTATGCCACTAGAACGATTCTATTCTTGAAGGACGATGGGACTTTGAAGCCATTGGCTATTGAACTAGGTGTACCCCATCCTGATGGAGATGAATGCGGCTTTATAAGCAGGGTCGTCTTGCCTGCAGATCAAGGGGCTGAGGGTACCATTTGGCTATTGGCTAAAGCTTATGTGTCTGTAAACGACTCTGGCTATCATCAACTTGTTAGCCACTGGCTACAAACTCATGCAGTTATTGAGCCATTTGTCATAGCAACTAACAGGCAGCTCAGTGTTCTTCATCCTATTCATAAACTTCTGTCCCCTCATTTTCGTGACACAATGAATATAAATGCGCTTGCTCGACAAGCCTTGATCAATGCAAATGGAATCATAGAGTTGTCATTCTTGCCTGGACAATACTCGATAGAGATGTCTTCCAAGGTTTACAAGAATTGGGTTTTCCCTGATCAAGCCCTACCTACAGATCTTATCAAAAGAGGAATGGCTGTCGAGGATTCAGAATGTCCTTATGGGCTTCGCCTGCTGATAGAGGACTACCCTTTTGCTGTGGATGGACTTGAGATATGGACTGCTATTTGGAATTGGGTTCATGACTATGTTCACTGCTACTATGAGGACAATGAAGATGTTAAAAATGACTCTGAACTACAAACTTGGTGGAAAGAAGCTGTAGAAGTTGGTCACGGAGATTTAAAAGATCAGACTTGGTGGTTCAAAATGCAAACTCGTGCAGAGCTTATTGAAACCTGCACTATCATCATATGGACTTCTTCAGCCCTTCATGCTGCTGTCAATTTTGGACAATATCCTTATGGAGGTTATATTGTAAACCGTCCAACTCTTAGCAGGAGATTGCTTCCCGAAGAAGGAACTCCAGACTATGAAGAGCTGAAGACGAACCCAGAGAAAGCTTTCTTGAAAACAATAACACCGAAGTTGCAGACCCTTATTGACCTTTCAGTTATAGAAATATTATCAAGGCACGCCTCTGATGAGGTCTATCTCGGTACAAGGGACAATCCTAACTGGACTTCTGATGTGAAGCCATTGGAAGCCTTCAAGAAGTTCGGAAAGAAGTTGGAAGAGATTGAGCAAAAGCTGATAGAAAGGAACAAAACTGAGACACTAAGAAACAGGGTTGGGCCAGTCAACATGCATTACACTCTTCTGTATCCTACAAGTGAGGAAGGACTCACCAGCAGAGGAATTCCAAACAGTATCTCTATCTGA 2628 0.4429 MFNSGLTNLVPDILTGGHNKSQIKGTVVLMTKKVLDFNNLNLNVGINLGVGVAGSVLDGLRQFLGGAVSFQLISANKTDTGNGLGRLGKAASLEGFVTTLPTLLEGQSAFSVHFDYSHDFGVPGAFVIRNNLLTEFYLVSVTLDDIPNHGTVHFVCNSWIYPASKYKSDRIFFSNKAYVPSKTPAALVKYREQELITLRGDGFAELQEHDRVYDYATYNDLGWPDLSKSFVRPTIGGSSEYPYPRRGRTSRPPSKSDPNTESRLLPGVQNFDIYVPRDERFGHVKLSDFLTYFIKSISQDLRPALESAFNFLSNEFESFDEVRELYEGGFKLPQDVLKNISQKMPVPMLKEIFRTDGEQFLRYPTPKVIKENKSGWMTDEEFAREMLAGVNPGVIRALQEFPPKSTLDVRVYGDQTSKITKEQLEQNMNGITVDEALECKRLFILDHHDAFMPYLRKINETSKKAYATRTILFLKDDGTLKPLAIELGVPHPDGDECGFISRVVLPADQGAEGTIWLLAKAYVSVNDSGYHQLVSHWLQTHAVIEPFVIATNRQLSVLHPIHKLLSPHFRDTMNINALARQALINANGIIELSFLPGQYSIEMSSKVYKNWVFPDQALPTDLIKRGMAVEDSECPYGLRLLIEDYPFAVDGLEIWTAIWNWVHDYVHCYYEDNEDVKNDSELQTWWKEAVEVGHGDLKDQTWWFKMQTRAELIETCTIIIWTSSALHAAVNFGQYPYGGYIVNRPTLSRRLLPEEGTPDYEELKTNPEKAFLKTITPKLQTLIDLSVIEILSRHASDEVYLGTRDNPNWTSDVKPLEAFKKFGKKLEEIEQKLIERNKTETLRNRVGPVNMHYTLLYPTSEEGLTSRGIPNSISI 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1153 875 FunFam Lipoxygenase 375 508 - -
Lele39g1153 875 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 177 875 IPR013819 GO:0016702|GO:0046872
Lele39g1153 875 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 22 178 IPR036392 GO:0005515
Lele39g1153 875 FunFam Lipoxygenase 510 874 - -
Lele39g1153 875 SUPERFAMILY Lipoxigenase 180 875 IPR036226 -
Lele39g1153 875 PANTHER LIPOXYGENASE 21 875 IPR000907 GO:0016702|GO:0034440|GO:0046872
Lele39g1153 875 Gene3D - 509 874 - -
Lele39g1153 875 MobiDBLite consensus disorder prediction 237 264 - -
Lele39g1153 875 CDD PLAT_LH2 22 175 IPR042057 -
Lele39g1153 875 ProSitePatterns Lipoxygenases iron-binding region signature 2. 558 568 IPR020834 GO:0016702|GO:0046872
Lele39g1153 875 ProSitePatterns Lipoxygenases iron-binding region signature 1. 531 545 IPR020833 GO:0016702|GO:0046872
Lele39g1153 875 Gene3D PLAT/LH2 domain 15 178 - -
Lele39g1153 875 Gene3D - 375 508 - -
Lele39g1153 875 Pfam PLAT/LH2 domain 82 173 IPR001024 GO:0005515
Lele39g1153 875 PRINTS Lipoxygenase signature 551 571 IPR013819 GO:0016702|GO:0046872
Lele39g1153 875 PRINTS Lipoxygenase signature 531 548 IPR013819 GO:0016702|GO:0046872
Lele39g1153 875 PRINTS Lipoxygenase signature 513 530 IPR013819 GO:0016702|GO:0046872
Lele39g1153 875 SMART LH2_4 21 175 IPR001024 GO:0005515
Lele39g1153 875 Gene3D - 179 284 - -
Lele39g1153 875 Pfam Lipoxygenase 187 858 IPR013819 GO:0016702|GO:0046872
Lele39g1153 875 Gene3D - 285 374 IPR027433 -
Lele39g1153 875 ProSiteProfiles PLAT domain profile. 40 174 IPR001024 GO:0005515
Lele39g1153 875 PRINTS Plant lipoxygenase signature 361 377 IPR001246 GO:0016491
Lele39g1153 875 PRINTS Plant lipoxygenase signature 788 802 IPR001246 GO:0016491
Lele39g1153 875 PRINTS Plant lipoxygenase signature 209 225 IPR001246 GO:0016491
Lele39g1153 875 PRINTS Plant lipoxygenase signature 170 191 IPR001246 GO:0016491
Lele39g1153 875 PRINTS Plant lipoxygenase signature 242 261 IPR001246 GO:0016491
Lele39g1153 875 PRINTS Plant lipoxygenase signature 313 334 IPR001246 GO:0016491
Lele39g1153 875 PRINTS Plant lipoxygenase signature 466 490 IPR001246 GO:0016491
Lele39g1153 875 PRINTS Plant lipoxygenase signature 400 419 IPR001246 GO:0016491
Lele39g1153 875 PRINTS Plant lipoxygenase signature 144 162 IPR001246 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1153 Lele-ChrLele39 20090889 20095510 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1153 12 875 Acyl Lipid Metabolism Gene Families AT1G55020 61.264 0.0 1118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0273 37 2297341 2302228 Lele39g1153 39 20090889 20095510 hybridization