Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g1149 ATGACATCGACGGTGATTAACTACACCATGGTCGTCACCGGTGCTGGCGCTGACGAACTCGTCATGGCCGGCCAATTCATCGGTTCTAAAGAACCTGCTCCTCCATGGCTAGAGAAAAGAGCAAATGTTGCAGATATGAAAAGCATGGAGAAATATGAACGCCATGCTCCGAAAGAAGAAAATGGTATCAGCACATTTTCTGCCACATTGGGAACCCAACAAAAATCACACGACCTTACTTTCAATTGGTTCGAAGAGAAGGGAATTCCACAAGTATTTGTGCTTTTGCTTCTTGATTTTGAGATCTTCCTTGTGAGTCTCACTGTTCATCCCATTCCCAATCTTACTTCTGAGCCTCTTCATTTCATCTGCAACTCTTGGGTTGACACGTTCAATAACACAAACCTCGTTCGTCTTTTCTTCATCAACCAGTCATATCTGCCTAGTCAAACACCAGGACTAGTGGGTTTCTACCGAGAAGCAGAGCTGCAAGGTTTAAGAGGAGAACACGATGAAAGTGATGGAGTTCGGAAGGAATGGGATATAATCTATGATTATGCAACCTACAATGACTTGGGTGATGTTGATGCAAGTCCAGATCTTGCTCGTCCAACTCTTGGAGGATCCTCTCAATATCCCTACCCTCGTAGGCTAAGAACTGGAAGGGCCCCATCACAAAATGATCCGAGCACTGAGAGCAGACTCCCTGCAGATCAAGCCTTTTCGGTGTATGTTCCAAGAGATGATCGATTTGGAGACCAGAAGATGTTTGAGTTTCTGCAATATTTTCCCAAATCAACAATGAACCTTTTGAAATCATATGTAGCAGCGGAATTGGAGGTCTCAGAAAAAGAATTTGAAAGCTTTGAACAAGTACTTAAAGTACTGTATGAAGATGGTTTTACATTTAATGTGCCTAAAGCGATACTTGATGCTATTGCTGGAAATCTCCCCATACCAACTCCCCCAGATAATGGAAATCTGCAATTATTGTTTCCAATCCCTAGTGTCATTCAAGATAATCTAGATGGATGGATGACGGATGAAGAATTTGCACGAGAGATGCTTGCTGGTGTGAATCCCGTTGCAATCTGCCTCCTTCAAGAGTTCCCCATAAAAAGCACGCTAGATATTAATATTTACGGTGATCATACATCTACCATAACAAGAGAACAATTGGAGAAGAACATGAATGGGCTCACAGTTAATGAGGCACTGAATTCCAAGAGGTTATTCATATTAGATCACTATGATGCATTTATGCTATATTTGAGGAAGGTAAACGAAACTTCCAGAAAGGCTTATGCAAGTAGGACAGTGCTTTTCCTTCAAAATGATGGAACTTTGAAGCCACTTGCTATTGAACTGAGTTTACCTCATCCTGATGGAGATCAATTTGGCGCTATCAGTAAAGTGTATCTGCCTCAAACTGATGGTGTTGACAGAACCATTTGGCAATTGGCTAAAGCTTATGTAGTTGTAAATGACACAGGCTATCATCAACTTGTTAGCCACTGGCTGAATACTCATGCTGTGATGGAGCCATTTTATATTGCAACACAGAGGCAACTCAGTCAACTTCATCCTATTCATAAGCTTCTTCATCCTCATTTTCATGACACCTTATTCATCAATGCACTTGGCCGCCAAAACTTAATCTCTGCAGATGGAATTATAGAGAACTCATTCTTGCCTGGAAAATATTGTATGGAAATGTCATCTGTGGTTTACAAGAGCTGGAATTTCCTTGACCAAGCCTTACCTACTGATCTCATCAAGAGAGGAATGGCAGTAGAGGATCCAACTGCTCCTCATGGACTTAACCTTGTGATAGAGGACTACCCTTATGCTGTAGATGGACTACTAATATGGGATGCTATTAAGACCTGGGTTCATGAGTATGTCTCTCATTACTATGAGTCAGATGAGATCATTAAGCAGGACCCTGAGCTACAATCATGGTGGAAAGAACTGGTAGAAGTAGGTCATGGTGACCTAAAAGATAAGGACTGGTGGCCTAAGATGCAGACTCGTCAAGAGCTAATTGACTCATGCATTATCATCATATGGACAGCTTCAGCTCTTCATGCAGCTGTGAATTTTGGACAGTACCCTTATGGAGGGTATATCTTAAACCGTCCTACACTCAGTAGAAGGTTGATGCCAGAGGAGGGAACCCAAGAATACGAAGAGATGGTGAATAATCCGGAGCTAGCTTTCTTGAAAACAATCACACCAAAGTTTGAGACTCTTCTTGATCTTTCAATTATAGAGATTTTGTCAAGCCATACCACTGATGAGATTTATCTTGGAACAAGGAGTATTCCTTACTGGACATCTGACGCAAAGGTGTTGGAGGCTTTTAAGACGTTTGGTGATAAACTAGCAGAGATTGAGAAAACATTGATAAGGAGGAATGAAGATGGGACACTGAGAAATAGGGTTGGGCCAGTGATGCTGCCTTACACTTTGCTCTATCCTAGCAGTGAACCAGGACTCACAGGAAGAGGAATTCCAAACAGTATCTCTATATGA 2535 0.4185 MTSTVINYTMVVTGAGADELVMAGQFIGSKEPAPPWLEKRANVADMKSMEKYERHAPKEENGISTFSATLGTQQKSHDLTFNWFEEKGIPQVFVLLLLDFEIFLVSLTVHPIPNLTSEPLHFICNSWVDTFNNTNLVRLFFINQSYLPSQTPGLVGFYREAELQGLRGEHDESDGVRKEWDIIYDYATYNDLGDVDASPDLARPTLGGSSQYPYPRRLRTGRAPSQNDPSTESRLPADQAFSVYVPRDDRFGDQKMFEFLQYFPKSTMNLLKSYVAAELEVSEKEFESFEQVLKVLYEDGFTFNVPKAILDAIAGNLPIPTPPDNGNLQLLFPIPSVIQDNLDGWMTDEEFAREMLAGVNPVAICLLQEFPIKSTLDINIYGDHTSTITREQLEKNMNGLTVNEALNSKRLFILDHYDAFMLYLRKVNETSRKAYASRTVLFLQNDGTLKPLAIELSLPHPDGDQFGAISKVYLPQTDGVDRTIWQLAKAYVVVNDTGYHQLVSHWLNTHAVMEPFYIATQRQLSQLHPIHKLLHPHFHDTLFINALGRQNLISADGIIENSFLPGKYCMEMSSVVYKSWNFLDQALPTDLIKRGMAVEDPTAPHGLNLVIEDYPYAVDGLLIWDAIKTWVHEYVSHYYESDEIIKQDPELQSWWKELVEVGHGDLKDKDWWPKMQTRQELIDSCIIIIWTASALHAAVNFGQYPYGGYILNRPTLSRRLMPEEGTQEYEEMVNNPELAFLKTITPKFETLLDLSIIEILSSHTTDEIYLGTRSIPYWTSDAKVLEAFKTFGDKLAEIEKTLIRRNEDGTLRNRVGPVMLPYTLLYPSSEPGLTGRGIPNSISI 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g1149 844 ProSitePatterns Lipoxygenases iron-binding region signature 2. 527 537 IPR020834 GO:0016702|GO:0046872
Lele39g1149 844 MobiDBLite consensus disorder prediction 200 236 - -
Lele39g1149 844 ProSitePatterns Lipoxygenases iron-binding region signature 1. 500 514 IPR020833 GO:0016702|GO:0046872
Lele39g1149 844 Gene3D - 147 254 - -
Lele39g1149 844 Pfam Lipoxygenase 158 827 IPR013819 GO:0016702|GO:0046872
Lele39g1149 844 PANTHER LIPOXYGENASE 66 844 IPR000907 GO:0016702|GO:0034440|GO:0046872
Lele39g1149 844 Gene3D - 255 342 IPR027433 -
Lele39g1149 844 Gene3D - 478 843 - -
Lele39g1149 844 FunFam Lipoxygenase 344 477 - -
Lele39g1149 844 Gene3D PLAT/LH2 domain 40 146 - -
Lele39g1149 844 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 67 146 IPR036392 GO:0005515
Lele39g1149 844 PRINTS Plant lipoxygenase signature 138 159 IPR001246 GO:0016491
Lele39g1149 844 PRINTS Plant lipoxygenase signature 369 388 IPR001246 GO:0016491
Lele39g1149 844 PRINTS Plant lipoxygenase signature 435 459 IPR001246 GO:0016491
Lele39g1149 844 PRINTS Plant lipoxygenase signature 180 196 IPR001246 GO:0016491
Lele39g1149 844 PRINTS Plant lipoxygenase signature 757 771 IPR001246 GO:0016491
Lele39g1149 844 PRINTS Plant lipoxygenase signature 112 130 IPR001246 GO:0016491
Lele39g1149 844 PRINTS Plant lipoxygenase signature 213 232 IPR001246 GO:0016491
Lele39g1149 844 PRINTS Plant lipoxygenase signature 330 346 IPR001246 GO:0016491
Lele39g1149 844 FunFam Lipoxygenase 479 843 - -
Lele39g1149 844 Gene3D - 343 477 - -
Lele39g1149 844 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 145 844 IPR013819 GO:0016702|GO:0046872
Lele39g1149 844 SUPERFAMILY Lipoxigenase 147 844 IPR036226 -
Lele39g1149 844 PRINTS Lipoxygenase signature 500 517 IPR013819 GO:0016702|GO:0046872
Lele39g1149 844 PRINTS Lipoxygenase signature 482 499 IPR013819 GO:0016702|GO:0046872
Lele39g1149 844 PRINTS Lipoxygenase signature 520 540 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g1149 Lele-ChrLele39 20054864 20060111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g1149 60 844 Acyl Lipid Metabolism Gene Families AT1G55020 55.051 0.0 870
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0277 37 2340098 2345234 Lele39g1149 39 20054864 20060111 hybridization