Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0791 ATGCATGAAGCAGCAATAATGGATTCAAAGAAGTCTAACAAGATCAGAGAAATCGTTAAACTTCAACAAATCCTCAAGAAATGGAAGAAGCTAGCAACTTCTTCTTCCATCGGAGCCACCACCACCACCAGCAGCAGTAACAAAAGCATAAAGTTCTTTTCAAGAAATCTCTCATTCACCGACGTCGTTTCACCATCCTCCACCAACAACAGCGTCGTGGTGGTCCCCAAAAAAGGGTTTCTCGTCGTCTGCGTCGGAGAAGAGCTGAAGAGATTCACAATTCCAATGGAATACTTATCCCACCCAGCATTTCAGATTCTGTTACGAGAAGCAGAAGAGGAATTCGGATTCCATCAAGAGGGAGTACTCAAGATTCCATGCCACGTGTCCTTGTTCGAGAAGGTATTGAAAGTGGTGGAAGAAAAGAGACCAATGTTCTTCGGAGAAGATAAGGATGCTTTTATTAGTTGTTATGGTTCAGATTGTGATGTTGTTACTCCTACTCATCATCATGCTGTTCAAACATGTACATGA 534 0.4251 MHEAAIMDSKKSNKIREIVKLQQILKKWKKLATSSSIGATTTTSSSNKSIKFFSRNLSFTDVVSPSSTNNSVVVVPKKGFLVVCVGEELKRFTIPMEYLSHPAFQILLREAEEEFGFHQEGVLKIPCHVSLFEKVLKVVEEKRPMFFGEDKDAFISCYGSDCDVVTPTHHHAVQTCT 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0791 177 Pfam Auxin responsive protein 27 138 IPR003676 GO:0009733
Lele39g0791 177 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 47 135 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0791 Lele-ChrLele39 16965224 16965757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0791 7 170 Calmodulin-binding Proteins AT2G24400 48.913 9.86e-50 157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0791 39 16965224 16965757 Lele39g0791 39 16965224 16965757 ECH
Lele37g0633 37 5315443 5315997 Lele39g0791 39 16965224 16965757 hybridization
Lele38g0599 38 5036985 5046793 Lele39g0791 39 16965224 16965757 hybridization