Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0562 ATGACTTGCGAAGTTCTGAGAAGCAAGCCATATGCAGAAGATGAGATAATTACAATGGAGGTGTCTCTCTTGCCCTTCTCATACATATCAAAACAGACACAAACAATGGCTTCAAGACCTGGAATCCTCACTGATTGGCCATGGACGCCTCTTGGAAACTTTAAGTATGTGATATTGGCTCCATGGGCGATTCACAGCACATATTCTTTGTTTGTGAATGAGAAAAGTGAAAGGGACGTATCAACGGTTCTGATTCTTCCTCTGATGATATGGCGAATGGTTCACAATCAGATTTGGATCTCTCTCTCTCGTTATCGAACCGCAAAAGGAAAATCGAGGATTGTCGATAAAGCCATTGAGTTTGATCAAGTTGATCGCGAAAGAAACTGGGATGACCAAATATTGTTTAATGGAGTATTATTCTACTTGTCGAGCTATACCATGAAAGGAGCATCTTACCTACCATGGTGGAGAACAGATGGTGTGATTATCACAATATTGTTGCATGTTGGTCCTGTTGAGTTCCTTTATTATTGGCTTCACAGAGCTCTTCATCACCATTTCCTCTATTCTCGCTACCATTCTCATCACCATTCTTCCATTGTCAGTGAGCCCATTACTTCCGTGATCCACCCATTTGCGGAGCACATATCGTACTTCTTATTGTTCTCCATACCGATGCTAACAATGGTGGTGACCGGAACGGGGTCGGTGGCGGCCATGGCCGGTTATTTGACTTTCATTGACTTCATGAACAATATGGGTCACTGCAACTTCGAGCTCATTCCCACTTTCCTCTTTCGCCTGTTTCCTCCTCTCAAATATCTCATGTACACCCCATCGTTTCACTCTTTGCACCATACACAGTTCAGGACAAACTACTCTCTGTTCATGCCATTATATGATTATCTATATGACACAGTGGACAAATCAACAGATGAATTACATGAATCTTCACTTAAGAGGCAAGAAGAATCCCCAGATGTTGTGCATCTAACACATCTCACAACTCCTGAATCTGTGTATCATCTTCGACTTGGATTTGCAAACTTGGCCTCACAACCTCACACATCAAAGTGGTATCTAAAGTTAATGTGGCCGGTAACATTGTGGTCCATGATCTTCACTTGGGTCTATGGCCGTACCTTCATTGTGGAGAGAAATCGTTTCGATAAACTCAAGCTTCAGACTTGGGTCCTGCCCAAGTACACCATTCAATACTTGATGCAATGGCAAAAAGAGGCAATAAACAAAGTGATAGAGGAGGCAATAGTGGAAGCAGAAAAGAAAGGAACAAAAGTGATAAGTTTAGGTCTAATGAATCAAGAAGAAGAGCTAAACACATATGGAGGGCTTTATGTAAACAAGAATCCAAAGCTAAATGTGAAGGTGGTTGATGGAAGCAGTTTGGCTGTTGCTATACTTCTTCACACTATTCCAAAGGAAACAACTCAAGTCTTGCTTAGAGGCAAACTCACCAAGGTTGCTTCTGCCCTTGCTTTTAATTTATGCCAGATGGGTATTCAGGTAGCTACAGTGCATGAGGACGAGCACATGAAGCTGAAAAGCTCATTCAACAATAAATGCATAAGTAATTTGATTGTCTCTAAAAGTTATTCTCAAAAGATATGGTTAGTGGGAGATGGAGTGAGTGAAGAGGAACAACAGAGAGCACCAAAAGGAACAACATTCATTCCATACTCACAACTCCCACCAATCAAACATCGCAAAGATTGCTCTTACCATTACACTCCATCCATGCTCACTCCTTTGTCCCTTGAGAATGTTGACTCTTGTGAGAATTGGTTACCAAGAAGGGTAATGAGTGCATGGAGAATAGCAGGAATAGTGCATGCTTTAGAAGGATGGAGTGAACATGAATGTGGATATGCAATGTTCAACACTGACAAAGTTTGGAAGGCAACGCTTCAACATGGCTTTCAACCTCTCATTAACCCCCTAACTAATTAA 1971 0.416 MTCEVLRSKPYAEDEIITMEVSLLPFSYISKQTQTMASRPGILTDWPWTPLGNFKYVILAPWAIHSTYSLFVNEKSERDVSTVLILPLMIWRMVHNQIWISLSRYRTAKGKSRIVDKAIEFDQVDRERNWDDQILFNGVLFYLSSYTMKGASYLPWWRTDGVIITILLHVGPVEFLYYWLHRALHHHFLYSRYHSHHHSSIVSEPITSVIHPFAEHISYFLLFSIPMLTMVVTGTGSVAAMAGYLTFIDFMNNMGHCNFELIPTFLFRLFPPLKYLMYTPSFHSLHHTQFRTNYSLFMPLYDYLYDTVDKSTDELHESSLKRQEESPDVVHLTHLTTPESVYHLRLGFANLASQPHTSKWYLKLMWPVTLWSMIFTWVYGRTFIVERNRFDKLKLQTWVLPKYTIQYLMQWQKEAINKVIEEAIVEAEKKGTKVISLGLMNQEEELNTYGGLYVNKNPKLNVKVVDGSSLAVAILLHTIPKETTQVLLRGKLTKVASALAFNLCQMGIQVATVHEDEHMKLKSSFNNKCISNLIVSKSYSQKIWLVGDGVSEEEQQRAPKGTTFIPYSQLPPIKHRKDCSYHYTPSMLTPLSLENVDSCENWLPRRVMSAWRIAGIVHALEGWSEHECGYAMFNTDKVWKATLQHGFQPLINPLTN 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0562 656 Pfam WAX2 C-terminal domain 486 649 IPR021940 -
Lele39g0562 656 Pfam Fatty acid hydroxylase 168 307 IPR006694 GO:0005506|GO:0008610|GO:0016491
Lele39g0562 656 PANTHER STEROL DESATURASE 48 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0562 Lele-ChrLele39 5087277 5103207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0562 36 650 Lipid Metabolism Gene Families AT1G02190 59.200 0.0 748
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0562 39 5087277 5103207 Lele39g0562 39 5087277 5103207 ECH
Lele37g0872 37 18513629 18519213 Lele39g0562 39 5087277 5103207 hybridization
Lele38g0777 38 19320375 19328918 Lele39g0562 39 5087277 5103207 hybridization