Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele37g0310 ATGCATCGAGTAGCTTCCAAACTAGCATCGTCCATCAGCTCCTCCTCTTCCAAAAGACGTGTATATAATCGGATAATGTCCAACAGAAATTATGTGGCGAAAGATATCAACTTTGGAATTGGGGCTCGCGCTGCTATGCTTCAAGGGGTTTCTGAGGTTGCAGCGGCTGTAAAAGTAACAATGGGACCTAAGGGTCGCAATGTAATCATTGAGCAAAGTCATGGAAAACTCAAGATTACAAAGGATGGAGTGACCGTTGCCAAAAGTATCAAATTTGGAGACAAGGCCAAAAATCTTGGTGCTGATCTTGTGAAGCAGGTGGCTAAGGCTACCAATACTGCTGCTGGCGATGGTACAACTTGTGCAACTGTTCTTACACAGGCTATACTCACAGAAGGTTGCAAAGCAATTGCTGCTGGTGTAAATGTCATGGATTTGCGCAACGGTATAAATAAGGCAGTTGATACTGTAATTACGGATTTGAAAAGCAGAGCATTAATGATTAGTACACAAGAAGAAATAACCCAGGTTGGAACTATATCTGCTAATGGAGAGCGTGATATTGGAGAACTTATTGCAAGAGCAATGGAGAAAGTTGGAAAGGAGGGAGTGATTAGTGTTGCTGATGGGAACACTTTGCATAATGAGTTGGAAGTGGTAGAAGGAATGAAGCTGACCAGAGGCTATATATCTCCTTATTTTATTACTGATCATAAGACTCAGAAATGTGAATTGGAGCACCCCCTTATACTAATCCATGAGAAGAAAATATCAGACATGAGCTCACTGGTGAAAGTATTGGAGCTAGCAAGAGAGAAACATAGGCCACTTCTTGTTGTTGCGGAGGATGTTGAGGGGGATGCTTTGACTATGCTTATACTCAACAAGCATCGTGCTGGGCTTAAGGTTTGTGCCGTAAAAGCTCCTGGTTTTGGTGAAAATAGAAAAGCTGGTTTAGATGATCTAGCCATTCTTACCGGAGGAGAGGTCATCACAGAAGAACGAGGTTTGAACCTCGATAAAGTCCAGCAAGAAATGCTTGGTTCTGCCAGAAAGGTTACTGTTTCTCTTGACGATACTATTATTCTACATGGCGGTGGAGATAAGAAGCTCGTTGAAGATAGATGTGAGCAGCTCAGGGCAACAATTGAAAATAGCACTGCCACATTTGATAAAGAGAAAGCACAGGAACGACTATCAAAGCTATCTGGTGGTGTAGCTATTTTCAAGGTTGGAGGGGCTAGTGAAGCAGAAGTTGAGGAAAGGAAAGATAGGGTGACCGATGCTTTAAATGCTACAAGAGCAGCCGTGGAGGAAGGAATTTTGCCAGGTGGTGGAGTTGCTCTCTTATATGCCAGTAAAATATTGGACAACCTTCAAACCCAAAATGAGGATGAGAAAAGAGGAGTAGAGATAATTCAGAATGCACTCAAGGCACCTGCATTCACAATAGTTTCTAATGCTGGTTTTGATGGCGCTTTAGTTACCGGGAAATTGTTGGAACAAGGCGATGATAAGTTTGGTTTTGATTCCGCTAAAGGTGCTTATGTTGACATGGTGAAGTCTGGAATTATAGATCCTCTTAAAGTTGTCAGAACTGCATTGGTTGATGCTGCCAGTGTGTCGTTGTTGCTGACGACAACCGAGGCGGCTGTGGTGGATTCTCCTACTAGTAAAGCTCCAAAACGTGTGGCAGATATGGATCAGTTGGGCATCTAA 1719 0.4293 MHRVASKLASSISSSSSKRRVYNRIMSNRNYVAKDINFGIGARAAMLQGVSEVAAAVKVTMGPKGRNVIIEQSHGKLKITKDGVTVAKSIKFGDKAKNLGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKAIAAGVNVMDLRNGINKAVDTVITDLKSRALMISTQEEITQVGTISANGERDIGELIARAMEKVGKEGVISVADGNTLHNELEVVEGMKLTRGYISPYFITDHKTQKCELEHPLILIHEKKISDMSSLVKVLELAREKHRPLLVVAEDVEGDALTMLILNKHRAGLKVCAVKAPGFGENRKAGLDDLAILTGGEVITEERGLNLDKVQQEMLGSARKVTVSLDDTIILHGGGDKKLVEDRCEQLRATIENSTATFDKEKAQERLSKLSGGVAIFKVGGASEAEVEERKDRVTDALNATRAAVEEGILPGGGVALLYASKILDNLQTQNEDEKRGVEIIQNALKAPAFTIVSNAGFDGALVTGKLLEQGDDKFGFDSAKGAYVDMVKSGIIDPLKVVRTALVDAASVSLLLTTTEAAVVDSPTSKAPKRVADMDQLGI 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele37g0310 572 Gene3D GroEL 222 403 IPR027409 -
Lele37g0310 572 SUPERFAMILY GroEL-intermediate domain like 168 225 IPR027410 -
Lele37g0310 572 Gene3D - 167 440 IPR027410 -
Lele37g0310 572 PRINTS 60kDa chaperonin signature 298 321 IPR001844 GO:0042026|GO:0140662
Lele37g0310 572 PRINTS 60kDa chaperonin signature 113 140 IPR001844 GO:0042026|GO:0140662
Lele37g0310 572 PRINTS 60kDa chaperonin signature 428 449 IPR001844 GO:0042026|GO:0140662
Lele37g0310 572 PRINTS 60kDa chaperonin signature 380 405 IPR001844 GO:0042026|GO:0140662
Lele37g0310 572 PRINTS 60kDa chaperonin signature 57 83 IPR001844 GO:0042026|GO:0140662
Lele37g0310 572 Coils Coil 456 476 - -
Lele37g0310 572 Pfam TCP-1/cpn60 chaperonin family 53 554 IPR002423 GO:0005524
Lele37g0310 572 FunFam 60 kDa chaperonin 222 403 - -
Lele37g0310 572 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 28 562 - -
Lele37g0310 572 SUPERFAMILY GroEL apical domain-like 215 406 IPR027409 -
Lele37g0310 572 ProSitePatterns Chaperonins cpn60 signature. 435 446 IPR018370 GO:0005524|GO:0006457
Lele37g0310 572 SUPERFAMILY GroEL equatorial domain-like 37 552 IPR027413 -
Lele37g0310 572 Coils Coil 369 396 - -
Lele37g0310 572 Hamap Chaperonin GroEL [groEL]. 32 572 IPR001844 GO:0042026|GO:0140662
Lele37g0310 572 CDD GroEL 34 554 IPR001844 GO:0042026|GO:0140662
Lele37g0310 572 Gene3D - 36 553 IPR027413 -
Lele37g0310 572 TIGRFAM GroEL: chaperonin GroL 33 556 IPR001844 GO:0042026|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele37g0310 Lele-ChrLele37 2593708 2599324 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0310 37 2593708 2599324 Lele39g1114 39 19678757 19684364 hybridization