Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele31g0542 ATGGGTCAAGCTTTCCGAAAGCTCTTCGACACCTTCTTTGGGAACTCCGAGATGCGGGTTGTGATGCTTGGTCTTGATGCTGCTGGTAAAACAACTATACTGTACAAGCTGCATATTGGAGAAGTTTTATCTACTGTGCCTACTATTGGCTTCAATGTGGAGAAAGTTCAGTATAAGAATGTTATGTTCACAGTTTGGGATGTGGGAGGGCAAGAAAAATTAAGGCCACTCTGGAGGCACTATTTTAATAACACAGATGGTTTGATATATGTTGTTGATAGCTTGGACCGAGAGAGAATTGGAAAAGCAAAGCAGGAATTTCAGGTGGCTATCATAAGTGATCCATTCATGCTCAATAGTGTCATCTTGGTTTTCGCCAACAAACAAGACATGAAAGGAGCAATGACGCCTATGGAAGTATGTGAAGGACTAGGTCTGTTTGAACTCAAGAATAGAAAATGGCACATTCAAGGAACTTGCGCATTAAGGGGAGATGGCCTTTATGAGGGCTTGGACTGGTTGGCTGCAACTCTGAAGGAGAGAAATGCTGCTGGATACTCTTCACTAGGAACATCATCTTTCTAA 585 0.4239 MGQAFRKLFDTFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVMFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQVAIISDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFELKNRKWHIQGTCALRGDGLYEGLDWLAATLKERNAAGYSSLGTSSF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele31g0542 194 Gene3D - 3 187 IPR027417 -
Lele31g0542 194 PANTHER ADP RIBOSYLATION FACTOR-RELATED 8 177 IPR024156 GO:0005525
Lele31g0542 194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 182 IPR027417 -
Lele31g0542 194 SMART sar_sub_1 9 178 IPR006689 GO:0003924|GO:0005525
Lele31g0542 194 Pfam ADP-ribosylation factor family 6 177 IPR006689 GO:0003924|GO:0005525
Lele31g0542 194 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Lele31g0542 194 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Lele31g0542 194 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Lele31g0542 194 PRINTS GTP-binding SAR1 protein signature 152 176 IPR006689 GO:0003924|GO:0005525
Lele31g0542 194 CDD Arf1_5_like 18 177 IPR045872 GO:0003924
Lele31g0542 194 SMART arf_sub_2 1 182 - -
Lele31g0542 194 FunFam ADP-ribosylation factor 2 4 187 - -
Lele31g0542 194 TIGRFAM small_GTP: small GTP-binding protein domain 16 137 IPR005225 GO:0005525
Lele31g0542 194 ProSiteProfiles small GTPase Arf family profile. 11 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele31g0542 Lele-ChrLele31 13365093 13368694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele31g0542 20 136 Miscellaneous Gene Families AT5G05670 29.231 7.24e-07 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele31g0542 31 13365093 13368694 Lele31g0542 31 13365093 13368694 ECH
Lele29g0991 29 7344884 7348513 Lele31g0542 31 13365093 13368694 hybridization
Lele30g0447 30 9465979 9466613 Lele31g0542 31 13365093 13368694 hybridization