Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g1247 ATGGCACCCAAGGCCGAGAAGAAGCCCGCGGAGAAGAAACCCGCCGAAGAGAAGAAGTCGACGGTGGCAGAGAAAGCTCCGCCGGCGGAGAAGAAGCCCAAGGCCGGAAAGAAGCTGCCTAAGGAGGGTGGGGCCGCTGCCGGAGACAAGAAGAAGAAGAGGAACAAGAAGAGCGTAGAGACCTACAAGATCTATATCTTCAAGGTCCTTAAGCAAGTCCACCCTGACATTGGGATCTCAAGCAAAGCAATGGGGATCATGAACAGCTTCATTAACGACATCTTTGAGAAACTCGCTCAAGAGGCTTCTAGGCTCGCTCGTTACAACAAGAAGCCCACAATCACCTCCAGGGAAATCCAGACGGCGGTGAGGCTGGTGTTGCCCGGAGAACTTGCCAAGCATGCCGTCTCTGAGGGCACCAAAGCGGTGACCAAATTCACCAGTTCTTAA 450 0.5378 MAPKAEKKPAEKKPAEEKKSTVAEKAPPAEKKPKAGKKLPKEGGAAAGDKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g1247 149 ProSitePatterns Histone H2B signature. 117 139 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele30g1247 149 PRINTS Histone H2B signature 103 120 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele30g1247 149 PRINTS Histone H2B signature 62 80 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele30g1247 149 PRINTS Histone H2B signature 120 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele30g1247 149 PRINTS Histone H2B signature 133 146 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele30g1247 149 PRINTS Histone H2B signature 81 101 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele30g1247 149 SUPERFAMILY Histone-fold 33 149 IPR009072 GO:0046982
Lele30g1247 149 Gene3D Histone, subunit A 21 149 IPR009072 GO:0046982
Lele30g1247 149 FunFam Histone H2B 16 149 - -
Lele30g1247 149 MobiDBLite consensus disorder prediction 1 57 - -
Lele30g1247 149 SMART h2b3 52 148 IPR000558 GO:0000786|GO:0003677|GO:0030527
Lele30g1247 149 Pfam Core histone H2A/H2B/H3/H4 2 125 IPR007125 GO:0003677
Lele30g1247 149 PANTHER HISTONE H2B 10 148 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g1247 Lele-ChrLele30 15118870 15119319 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g1247 30 15118870 15119319 Lele31g1390 31 19669065 19669514 hybridization
Lele30g1247 30 15118870 15119319 Lele32g0150 32 864628 865077 hybridization