Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g1067 ATGTCGTTTTCCGGTGAGGAAGAGGACCTGTTCAAGAACCCTAGCCTTAGCCCTAGTCCTCAATTGACGAAGAAGAGACCCCCTAGCTGGTCTAACGTCTGGCTCAAGAACACGAAGCCTCTCAAGCATATGGTGGTTGCCATGCAACTTCAATCTCTTTCTCCTCCCGACGACCCCAAATCGAAAACCCTAAATGCCAATATTTTCCCAATTGACTCAACTCGTCTTTTGTCCGACGAGCTTCTCCTCAGAATCTTCGCTAAACTCACTGGATCGCAGAGGAAGTCCATTTCTCTTGTCTGCAAACGGTGGTTGAATCTGCAGGGACGGCTTGTACGGACCCTCAAAGTGCTTGATTGGAACTTCGTTTTATCTGGTAGATTGATTCATAGGTTCCCCAATTTAAACCATGTTGATTTGGTTCCTGGGTCGTTCATTTCGCCGCGGAATTCGGGTATTTATCTGAGTCAACGACTTGTTTCAATGCATATTGATTCTGGATTTTACCCCAATTGGTGTTTCGGGGAGGAGAAAAATCTGCTTGCTGTTGATATTATTGATAATGGTCTGAAAGCTCTTGCTAGTGGGTGTCCCAATTTGCGTAAACTGGAGATTATTGGTGCTAGTGAAGTGGGTTTATTCAGTGTGGCTGAGGAGTGTTCGACATTGCAAGAATTGGAATTGCAGAAATGCGATGACAATGTGCTGCGAGGGATTGCAGCGTGTAAGAATCTGCAGATCTTGAAATTGGTTGCAAATGTTGATGGTTTCTACAGCTCAGTGGTGTCCGATATTGGATTGACTATTCTGGCTCAAGGTTGCAAGAGACTGGTCAAGCTTGAACTTACTGGTTGTGAAGGGAGTTTTGATGGGATGAAAGCAATCGGAACATGCTGTCAAATGTTGGAGGAATTGACTTTATCAGATCATAGAATGGATGAAGGGTGGTTGGCAGCACTTTCGTTTTGTGAGAACTTAAAGACTTTGAGGATCCAATCATGTAAATGGATCGATCTAAATCCTGGACCCGAGGAGCATTTGGGTTCATGTTTTGCACTTGAACGGTTGCATTTGCAAAAGTGCCAGTTACGGGACAAAAATAGCATGGGAGCTATATTTCATGTATGCAGAGCTGCAAGAGAGATTATAATCCAGGATTGCTGGGGATTGGATGATAAGATGTTTAGTTTTGCAAGCATCTGCAGGCAGGTGAAGCTTTTAAGCTTAGCAGGCTGTTCATTGCTAACAACAGAAGGTTTAGAGTCTGTAATTCAATCCTGGAAAGATCTTCAGAGCCTTAGAGTGGTTTCCTGCAAGAACATAAAGGATAGTGAAATCTCACCCTCTCTAGCAACCATATTCACCACACTCAAAGAATTAAGATGGAGTCCAGATACCAAGTCTCTTCTTCCATCAAGTCTAATGGAGGTAAGCATGGGAAAGAAAGGAGTTAAATTTTTCAGAAGAACTTGA 1473 0.4338 MSFSGEEEDLFKNPSLSPSPQLTKKRPPSWSNVWLKNTKPLKHMVVAMQLQSLSPPDDPKSKTLNANIFPIDSTRLLSDELLLRIFAKLTGSQRKSISLVCKRWLNLQGRLVRTLKVLDWNFVLSGRLIHRFPNLNHVDLVPGSFISPRNSGIYLSQRLVSMHIDSGFYPNWCFGEEKNLLAVDIIDNGLKALASGCPNLRKLEIIGASEVGLFSVAEECSTLQELELQKCDDNVLRGIAACKNLQILKLVANVDGFYSSVVSDIGLTILAQGCKRLVKLELTGCEGSFDGMKAIGTCCQMLEELTLSDHRMDEGWLAALSFCENLKTLRIQSCKWIDLNPGPEEHLGSCFALERLHLQKCQLRDKNSMGAIFHVCRAAREIIIQDCWGLDDKMFSFASICRQVKLLSLAGCSLLTTEGLESVIQSWKDLQSLRVVSCKNIKDSEISPSLATIFTTLKELRWSPDTKSLLPSSLMEVSMGKKGVKFFRRT 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g1067 490 FunFam F-box protein 339 473 - -
Lele29g1067 490 SUPERFAMILY RNI-like 234 462 - -
Lele29g1067 490 SUPERFAMILY RNI-like 120 253 - -
Lele29g1067 490 Gene3D - 76 110 - -
Lele29g1067 490 Gene3D Ribonuclease Inhibitor 175 255 IPR032675 -
Lele29g1067 490 SMART LRR_CC_2 274 298 IPR006553 -
Lele29g1067 490 SMART LRR_CC_2 350 375 IPR006553 -
Lele29g1067 490 SMART LRR_CC_2 401 426 IPR006553 -
Lele29g1067 490 SMART LRR_CC_2 242 273 IPR006553 -
Lele29g1067 490 SMART LRR_CC_2 197 222 IPR006553 -
Lele29g1067 490 Gene3D Ribonuclease Inhibitor 256 344 IPR032675 -
Lele29g1067 490 Gene3D Ribonuclease Inhibitor 345 471 IPR032675 -
Lele29g1067 490 PANTHER UNCHARACTERIZED 76 446 - -
Lele29g1067 490 SUPERFAMILY F-box domain 61 108 IPR036047 GO:0005515
Lele29g1067 490 FunFam F-box protein At5g51380 70 338 - -
Lele29g1067 490 MobiDBLite consensus disorder prediction 1 31 - -
Lele29g1067 490 MobiDBLite consensus disorder prediction 14 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g1067 Lele-ChrLele29 8224288 8227109 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g1067 29 8224288 8227109 Lele31g0469 31 12589323 12592676 hybridization