Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0689 ATGGATCTTCTCTGCGATGCATACGGCAACGCGTCTGACGATGACCAAGATCAACCGAAACGTCAGAAGCTCGCGCCTTCTTCCTCCAACCCGCCAAAACCCTATCTTCCCCTTCCTGCTACTATCGACCACTGCTCGCAGCTCCAAACGCAATCTTCGCTTCCTGGCAGATATATTTCCAAGCGACAAAGGGCGCTTTTAGGCGTTGATCCCACTGTTTCCGAACCAGCTCTGGTCTCGCCTTCTGTCACATTATCTGGAAGCATCTTGGATACCGATCTACCTCCTTGCATTTTATCATTGTTGAGAAATGAAGCTAGAGGTCAGCAAAATCTGAACCTGATACCTGAAAGGCTATCTGTCGCTCTATCTGGCCATACAAAAGCTGTCAATGCTATACAATGGTCTCCCACTCATGCTCATCTCCTCGCATCTGCTGGGATGGACCATTTGGTTTGCATTTGGAATGTATGGAGTAGAGATCAAAAGAAAGCACGTGCAATAAACTTCCACAATGCCGCAGTGAAAGATGTGAAATGGTCTCAGCAAGGGCACTCTCTGCTTTCATGTGGATATGATTGCAAATCAAGGTTGATTGATGTAGAAAAGGGCTTTGAGACTCAGGTTTTCAGTGAAGATCAAATTGTTGGAGTTATAAAGTTTTATCCAGACAACTCAAGCCTCTTTCTTTCTGGTGGTTCAAAGGGCCATATTAGATTATGGGATGTCAGGACTAGCAAAGTAGTCCATAGCTTTAATCGCAATTTAGGTCCAATTTTGGATGTTGAGTTTACAATCGATGGGAAGAAGTTCATTTCTTCTAGTGATGTATCTGGGAGTAACGTCAGTGAGAACTCAATCATTGTTTGGGATGTGTCCAGACAGGTTCCGCTGTCTAGTCAGGTTTATGTTGAAGCTTATACCTGTCCGTGTGTAAGGCGCCACCCATTTGAGTCTACTTTTGTTGCCCAGTCAAATGGGAATTACATTGCAATTTTTACATCATACCCCCCTTTCAGACTAAACAAATACAAGAGGTATGAAGGACACGGGGTCTCTGCGTTCCCCATAAAGTGCAATTTCAGTTTGGATGGCAAAAGGCTTGCTTCTGGTTCTTCAGATGGTTGTATTTATATTTACGATTATCAGTCATCTAACGTTGTTAAGAAAATCAAGACCTCTGAACAAGCATGCATAGATGTTGCTTTCCATCCTATTATACCTAATGTTATTGCTTCATGCTCCTGGGATGGAAGCATTTCAATATTTGAATAG 1275 0.4322 MDLLCDAYGNASDDDQDQPKRQKLAPSSSNPPKPYLPLPATIDHCSQLQTQSSLPGRYISKRQRALLGVDPTVSEPALVSPSVTLSGSILDTDLPPCILSLLRNEARGQQNLNLIPERLSVALSGHTKAVNAIQWSPTHAHLLASAGMDHLVCIWNVWSRDQKKARAINFHNAAVKDVKWSQQGHSLLSCGYDCKSRLIDVEKGFETQVFSEDQIVGVIKFYPDNSSLFLSGGSKGHIRLWDVRTSKVVHSFNRNLGPILDVEFTIDGKKFISSSDVSGSNVSENSIIVWDVSRQVPLSSQVYVEAYTCPCVRRHPFESTFVAQSNGNYIAIFTSYPPFRLNKYKRYEGHGVSAFPIKCNFSLDGKRLASGSSDGCIYIYDYQSSNVVKKIKTSEQACIDVAFHPIIPNVIASCSWDGSISIFE 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0689 424 ProSitePatterns Trp-Asp (WD) repeats signature. 143 157 IPR019775 -
Lele29g0689 424 Gene3D - 103 424 IPR015943 GO:0005515
Lele29g0689 424 MobiDBLite consensus disorder prediction 1 35 - -
Lele29g0689 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 251 IPR001680 GO:0005515
Lele29g0689 424 Pfam WD domain, G-beta repeat 220 242 IPR001680 GO:0005515
Lele29g0689 424 Pfam WD domain, G-beta repeat 345 381 IPR001680 GO:0005515
Lele29g0689 424 Pfam WD domain, G-beta repeat 123 156 IPR001680 GO:0005515
Lele29g0689 424 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 157 - -
Lele29g0689 424 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 165 IPR001680 GO:0005515
Lele29g0689 424 SUPERFAMILY WD40 repeat-like 110 423 IPR036322 GO:0005515
Lele29g0689 424 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 22 424 - -
Lele29g0689 424 SMART WD40_4 161 200 IPR001680 GO:0005515
Lele29g0689 424 SMART WD40_4 384 424 IPR001680 GO:0005515
Lele29g0689 424 SMART WD40_4 203 242 IPR001680 GO:0005515
Lele29g0689 424 SMART WD40_4 340 381 IPR001680 GO:0005515
Lele29g0689 424 SMART WD40_4 245 291 IPR001680 GO:0005515
Lele29g0689 424 SMART WD40_4 116 156 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0689 Lele-ChrLele29 4349884 4352498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0689 199 405 Miscellaneous Gene Families AT5G08390 19.617 2.39e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0689 29 4349884 4352498 Lele32g0668 32 4227998 4230984 hybridization