Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0449 ATGGAACACGGATACAAGATGCGAGTGGCCTTTGCGATCGCTTCTTTGGCGGTTGTGTCAATCTACTTTACTGCTCGGTATCGGAGTCGGCGTAAGAAGAAGTATCCACCGAGTTTGTGTTACTTACATGCCGACCCGAAGCCACAGTATGCTTTTAAGCGAGTATTAGCGGATAACTCGTACACTGCGTTCAAGCACTTGAAGCTCAACAACGCTAGCTCTAAGAGGCCTTCAAATTCCCATCCTTTTGAGGCAGAGATTACAGCATTACTTAAGGACCCTCAGCCTCAATTAGAATTCAGTACCGAGATTGAGGAATTGAAGAAGAAAGATACATATGTTTGGATTGATACAGACTTGCAATTAAAGGAGCTTGTCAATGTATTAAATAAAGAGAGATTCTTTGCCGTGGACACAGAACAACATACTTTAAGATCTTTTCTTGGCTTTACAGCATTAATTCAGATTTCTACTCAGCAGGAGGATTATTTGATTGACACAATTGCCCTGCATGATTTAATGGGCATTCTTCGCCCGGTTTTTGCAAATCCTTTAATTTGTAAAGTGTTTCATGGAGCTGACAATGATGTTGTCTGGCTACAGAGAGATTTTCATATCTACGTTGTTAATCTATTTGATACATCAAAGGCATGTGAGGTGCTGTCAAAGCCACAGAAATCACTCGCTTATCTACTTGAAACTTATTGTGGTGTTACAACAAATAAATTATATCAGCGTGAAGACTGGAGACAACGTCCCCTCTCAGCAGCAATGATACTCTATGCACAAACAGATGCTCACTATTTGTTGTATATTTCAAATTGTTTGATCACTGAGCTCAAACAACTGGACGATGAGAACTCTGGTTCCGATGACAAATTCCATTTTCTTCATGAGGCTAGTCAACGTTCCAATATGACTTGTTTGCAACTTTTCACAAAAGAGATTGAAGCTTCTCCTGGGGAATCTGCTGCATTATCTCTATTTTCACGATATGTGGGTGGTGAGAGTTCTTCAGTTTCCAGTGAAACCCAGTTTCAGAATTTTGTGAGGCGACTATGTGCATGGAGAGATCTGATGGCTCGTTTCCATGATGAGAGCTTGAAATATGTATTATCAGACCAGTCAATTGTTGCTTTGGCTAATCAACCTCCGACAAGTGACTCTGAAATATGCAATGTCATAGCTCAGGCTGATATCAAAATAGAAATGGGTGTCAATTCTTTCTTCTCTTCTCCATCTCCTATTGTTGGCAGCCACCTAAGTGATGTCTATGATATGCTTAGTGAAAATTTAGGTAACACTGAAGATATTTATTCAGTAATTCTTCAGAAGTGCCTTGGTCCAAATGGGAGTTGTCCAATTTCTCTATTTAATTATTCTTTGTTGGCTAGCAGTAATCTGAGACCTATGATATCCTATAAACACCATAGTGTAAGAAACTCAAAACAAGTTTCTCGGAAGGCTTCTCGAGATTTGTTTGTCCAGAAATTCTCTTGTAAATCTCCTGTTTATCATAATTGTCGGATTTATGCTAATGATGGGCGACTGCTTTGTTACTGTGATCGGAGGAAGCTTGAATGGTACCTCAATCGGGATCTGGCAAAACTAGTTGATGAAGATCCACCTGCCATAATGCTTCTTTTTGAACCTAAAGGTCGCCCAGAGGACGAAGACAATGATTTTTATATCCAGAGCAAGAAAAACATATGTGTTGGCTGTGGTGAAAGAAATCACTACTTGCGGTACCGGATAATCCCATCATGCTATAGAATACATTTTCCTGAGCATTTGAAAAGCCATCGTTCTCATGATATTGTCCTGCTTTGTGTGGACTGTCATGAAGTTGCCCATGCTGCTGCAGAGAAATACAAGAGAAAGATAGCAGCTGAATTTGGGATTCCTCTCTATGTTCAGAGGGTAATTGATCCAGCACAAGCATCTGAAGTAACCTTTGAAGAGGGAGGTGTTTCTCCCTTACAGTTGCGAACAGCAGCCATGGCTCTTCTGCGCCATGGACCAAGAATGCCTCCCAATCGCCATGATGAACTGACTGAGATTGTGAAGAGGTACTATGGAGGAAGGGAGATATCTGAGGAAGATTTGGAGAGAGCATTGCTAGTTGGCATGAGCCCACATGAGAGAAGAAGATTTGAGAAGAAGAGAGGATATTCATTTAAACATTTAAATAGAGGTGCTGCTGTGGAGACGGTACAGGAGAATCATGGTGATTGCACACCAAAAATGGAAGTTGTGGACACATCAAATTTTAATGCTCTAGATGGTTCATCTGCAAATAAAGCAACAAGCAATGGAGTAGGAAGTGAACTTATTATGGTGAAGGATGATGTTGAAAACCCCACTGTATCTTCTTATGTAGGAATTAATGGAGCTGTCTCTGTTACCTCAACTGAACATGTGAGCACAGATAAAAATTTAGGTCCTAATGAGTTAAGTGCCTCTGCTGTAAATCCTGATGATAGCTGTCTAAGCAGAAGGACTCCAAATGGAATTGATGACTTATCCCCTAGAGATGTTGAAGAGTCCACTCAAGCGAAACATAATTCAAAACTGTCACTCTTAGGACATGGACCACATGGAAAGCAAGTTGTTGAACATTTAATGAAGGAATACGGCGAGGATGGCATTCGACAGTTTTGTCAGAGATGGAGACAAGTTTTTGTTGAAGCCGTCAAACCACGGTTTCTACCTTCTGGCTGGGACATAAATCACAGTGGTATAAGGGATTTCGGTGAATTTAGTGTCTACAATCCGCTCAGACAGGCTCCTGCCGATACTGCTACTAGCAAGTGA 2814 0.4094 MEHGYKMRVAFAIASLAVVSIYFTARYRSRRKKKYPPSLCYLHADPKPQYAFKRVLADNSYTAFKHLKLNNASSKRPSNSHPFEAEITALLKDPQPQLEFSTEIEELKKKDTYVWIDTDLQLKELVNVLNKERFFAVDTEQHTLRSFLGFTALIQISTQQEDYLIDTIALHDLMGILRPVFANPLICKVFHGADNDVVWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLYQREDWRQRPLSAAMILYAQTDAHYLLYISNCLITELKQLDDENSGSDDKFHFLHEASQRSNMTCLQLFTKEIEASPGESAALSLFSRYVGGESSSVSSETQFQNFVRRLCAWRDLMARFHDESLKYVLSDQSIVALANQPPTSDSEICNVIAQADIKIEMGVNSFFSSPSPIVGSHLSDVYDMLSENLGNTEDIYSVILQKCLGPNGSCPISLFNYSLLASSNLRPMISYKHHSVRNSKQVSRKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLNRDLAKLVDEDPPAIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGERNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAAEFGIPLYVQRVIDPAQASEVTFEEGGVSPLQLRTAAMALLRHGPRMPPNRHDELTEIVKRYYGGREISEEDLERALLVGMSPHERRRFEKKRGYSFKHLNRGAAVETVQENHGDCTPKMEVVDTSNFNALDGSSANKATSNGVGSELIMVKDDVENPTVSSYVGINGAVSVTSTEHVSTDKNLGPNELSASAVNPDDSCLSRRTPNGIDDLSPRDVEESTQAKHNSKLSLLGHGPHGKQVVEHLMKEYGEDGIRQFCQRWRQVFVEAVKPRFLPSGWDINHSGIRDFGEFSVYNPLRQAPADTATSK 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0449 937 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 46 318 - -
Lele29g0449 937 MobiDBLite consensus disorder prediction 806 831 - -
Lele29g0449 937 SMART 35exoneu6 113 281 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lele29g0449 937 Pfam HRDC domain 348 391 IPR002121 GO:0003676
Lele29g0449 937 Gene3D - 46 318 IPR036397 GO:0003676
Lele29g0449 937 Pfam 3'-5' exonuclease 113 280 IPR002562 GO:0003676|GO:0006139|GO:0008408
Lele29g0449 937 Gene3D HRDC domain 336 439 IPR044876 -
Lele29g0449 937 MobiDBLite consensus disorder prediction 806 864 - -
Lele29g0449 937 MobiDBLite consensus disorder prediction 838 852 - -
Lele29g0449 937 SUPERFAMILY HRDC-like 346 436 IPR010997 GO:0000166|GO:0044237
Lele29g0449 937 ProSiteProfiles HRDC domain profile. 343 423 IPR002121 GO:0003676
Lele29g0449 937 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 41 923 IPR045092 GO:0000175|GO:0000467
Lele29g0449 937 SUPERFAMILY Ribonuclease H-like 47 313 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0449 Lele-ChrLele29 2753817 2760080 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0449 29 2753817 2760080 Lele31g1095 31 17710109 17716321 hybridization
Lele29g0449 29 2753817 2760080 Lele32g0429 32 2724656 2725602 hybridization