Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0448 ATGCCTGTATTTATGCTTCATTCTGATAAAGACTGGATGTGGACTATTCCTGAACCTCAAGGAATTGCTCGACTAACTCCCATGGAAGCTCAAAAATTGAACGTAGTTTCAGAGGGTTGCAATTCAAGAATTGAAGTGAAGAGAGAATCTAAGGACATTTTTGGAGAAGTTTCCAAGACTCATAATGCCATACAAACTTTGGACAAGACCATATCAAATTTAGAGATGGAATTAGCGGCTGCAAGGGCCACTCAGGAATCGTTACGCAGTGGTGCTCCTGTATCAGAAGGTTCAGAGATGGTTCAACCATCCAGTAAGAGAAGAAGGTACTTAATGGTTGTAGGAATTAATACCGCTTTTAGCAGCCGGAAAAGAAGAGACTCAGTTCGTGCAACTTGGATGCCACAAGGTGAGAAAAGGAAGAAGCTGGAGGAAGAGAAGGGCATTATCATCCGTTTTGTCATTGGCCACAGTGCTACATCAGGGGGTATCCTGGACAGAGCTATTGAAGCAGAGGACCAAAAGCATGGCGACTTCCTGAAGCTGGATCATGTCGAAGGATACCTAGAATTGTCAGCCAAGACAAAGACATACTTAATTACTGCTGTTAACTTGTGGGATGCTGATTTCTATGTTAAAGTTGATGATGATGTTCATGTCAACATTGATTGTGAATGGAAGGCTCAAGCAGGCAACGTTTGCGTTGCTTCATTTGATTGGAGTTGTAGTGGGATTTGCAAGTCTGCTGAAAGAATCATAGAGAACATGATTTGCAACAAATCTGCGAGAAAATGGCGCCTAATTGTTGCCATGGCTAAGAGTTCATTCAAGATGGAACACCCCCTTGAAAGGAGGCAGGCTGAAGCTGCTCGCATCAGAGAAAAATATCCTGATCGAATACCGGTGATCGTTGAAAGGGCTGAAAAGAGTGACGTTCCTGAAATTGATAAGAAAAAGTATCTGGTTCCTGCTGATCTGACTGTTGGACAGTTTGTGTATGTTGTGAGAAAGAGAATCAAGCTGAGTCCTGAGAAGGCCATCTTTATCTTCGTCAAGAACATTTTACCTCCGACTGCTGCTATGATGTCTGCAATTTATGAGGAAAATAAGGATGAAGATGGGTTCCTGTACATGACTTACAGCGGGGAGAACACGTTTGGGATGATGGAATAA 1173 0.4271 MPVFMLHSDKDWMWTIPEPQGIARLTPMEAQKLNVVSEGCNSRIEVKRESKDIFGEVSKTHNAIQTLDKTISNLEMELAAARATQESLRSGAPVSEGSEMVQPSSKRRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDQKHGDFLKLDHVEGYLELSAKTKTYLITAVNLWDADFYVKVDDDVHVNIDCEWKAQAGNVCVASFDWSCSGICKSAERIIENMICNKSARKWRLIVAMAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGMME 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0448 390 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 273 388 IPR004241 -
Lele29g0448 390 FunFam Autophagy-related protein 271 387 - -
Lele29g0448 390 Pfam Domain of unknown function (DUF4094) 13 83 IPR025298 -
Lele29g0448 390 Coils Coil 64 84 - -
Lele29g0448 390 Pfam Galactosyltransferase 124 223 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lele29g0448 390 CDD Ubl_ATG8 282 384 - -
Lele29g0448 390 Gene3D - 259 388 - -
Lele29g0448 390 SUPERFAMILY Ubiquitin-like 273 387 IPR029071 -
Lele29g0448 390 Gene3D - 103 224 - -
Lele29g0448 390 Pfam Autophagy protein Atg8 ubiquitin like 284 387 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0448 Lele-ChrLele29 2734976 2747228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0448 223 254 Glycosyltransferase AT1G05170 87.500 1.22e-13 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0448 29 2734976 2747228 Lele31g1096 31 17724894 17728178 hybridization
Lele29g0448 29 2734976 2747228 Lele32g0428 32 2712075 2715403 hybridization