Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0452 ATGTTCGATCCCAAGCAGCCATCTTCTTGGTGTCCTACACAAACCCATAATCTCATAACTTGCCACAAAATCATGGATCCCCCCGACGATGAACCTCACAGATGGCCAACTCTTCATGAGGTCGTATCAGAAATCAAAGCCATAGGGAAGATATCAGGCCCAACAGCCATAACTGGTCTGCTCATGTACTCGCGAGCTATGATATCTATGCTTTTCCTTGGCTATCTGGGCGAGATGGAGCTTGCGGGAGGCTCTCTCTCTATTGGTTTCGCCAACATCACTGGCTACTCCGTTCTCTCTGGTTTAGCAATGGGAATGGAACCAATATGCGGACAAGCTCACGGCGCTAAGCAAGGCAAGCTTCTTGGCCTCACCCTCCAAAGAACCGTTCTCCTTCTTCTCTCCACTTCCATACCCATCTCCTTCATGTGGCTCAACATGAAGACCATCCTCTTATGGTGTGGTCAAGACGATGCCATATCCTCAATCGCACAGAGTTTCATTTCTTTCTCCATTCCTGACCTCTTGTTTCTTTCTCTTCTTCACCCTCTCCGAGTCTTTCTCAGAACCCAGAGCATCACTTGGCCCTTAACTTATTGCTCAGCCATCTCTGTTCTCCTCCATGTGCCGTTAAATTTCCTTCTGGTTGTTCACTTCAACATGGGTATTGCTGGTGTGGCCATAGCCATGGTTTGGACCAACCTTAACCTCTTCCTCTTCCTCTGTTCCTTTATCTACTTCTCCGATGTATGTAAGGACTCGTGGGTCCCTCTTAGCATTGACTGTCTCAAGGGCTGGTCTTCTCTTCTTGCTCTTGCGATTCCAACCTGCGCCTCTGTGTGCCTCGAGTGGTGGTGGTACGAGCTCATGATAATGCTGTGTGGCCTTCTCGGTAATCCCAAAGCCACCATTGCATCAATGGGGATTCTGATTCAAACAACCTCACTTGTCTATGTCTTCCCGTCATCCTTAAGTCTTGGTGTTTCCACAAGAGTGGGGAACGAGCTAGGCGCTAACCGCCCTGGAAAAGCCCGCATTTCCATGATCGTCTCGCTCTTCTGTGCCGTCGGCTTGGGTCTCGGGGCTATGGGCTTCACCACCTTAATGAGGCATCAGTGGGGCAGATTCTTCACTGGCGATGAAGAAATCCTCAAGCTCACGGCCATCGCATTGCCTATCGCCGGCCTGTGTGAGCTCGGAAACTGCCCACAGACAACCGGTTGCGGAGTTCTGAGAGGCAGCGCCAGACCCACCGTTGGAGCTAACATCAATCTGGGTTCGTTTTACTTAGTGGGCATGCCAGTGGCAATCCTCCTAGGGTTCATCGCAAAACTGGGTTTTGCAGGGCTCTGGCTCGGCTTGCTTGCTGCTCAAGCCTCGTGCGCGTGCCTCATGCTGTTTGTTCTGTGTACGACGGATTGGAACGTGCTGGCAGAAAGAGCAAGAGAGCTAACTTCAGCCGATGCTGCAAATTCTGGTTCATTACCCACTTTCACAAAAACAGAGTGTAACAAGAAGGATTCGCTTAAAGACATAGTGATCAGTGATCCCCCCCCTCTCGAAACAGAACCACTTATCATACCCGTTACCCATCCTTCGACATACGGTGAATTCGTTAGTTAG 1623 0.5022 MFDPKQPSSWCPTQTHNLITCHKIMDPPDDEPHRWPTLHEVVSEIKAIGKISGPTAITGLLMYSRAMISMLFLGYLGEMELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAHGAKQGKLLGLTLQRTVLLLLSTSIPISFMWLNMKTILLWCGQDDAISSIAQSFISFSIPDLLFLSLLHPLRVFLRTQSITWPLTYCSAISVLLHVPLNFLLVVHFNMGIAGVAIAMVWTNLNLFLFLCSFIYFSDVCKDSWVPLSIDCLKGWSSLLALAIPTCASVCLEWWWYELMIMLCGLLGNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANRPGKARISMIVSLFCAVGLGLGAMGFTTLMRHQWGRFFTGDEEILKLTAIALPIAGLCELGNCPQTTGCGVLRGSARPTVGANINLGSFYLVGMPVAILLGFIAKLGFAGLWLGLLAAQASCACLMLFVLCTTDWNVLAERARELTSADAANSGSLPTFTKTECNKKDSLKDIVISDPPPLETEPLIIPVTHPSTYGEFVS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0452 540 TIGRFAM matE: MATE efflux family protein 57 451 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lele28g0452 540 Pfam MatE 54 214 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lele28g0452 540 Pfam MatE 275 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lele28g0452 540 PANTHER MULTIDRUG RESISTANCE PROTEIN 40 474 - -
Lele28g0452 540 CDD MATE_eukaryotic 44 480 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0452 Lele-ChrLele28 2875526 2877315 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0446 25 2795072 2796831 Lele28g0452 28 2875526 2877315 hybridization
Lele26g0457 26 2899485 2904469 Lele28g0452 28 2875526 2877315 hybridization