Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1639 ATGATGATAGGGGTGGTGTTGTGCCAGAAGGAGATAGCCAATGCTCACTTGTATATGCAGAGTCAGAGCGAGATGGAGCTTGCAGGAGGCTCTCTCTCTATTGGTTTCGCCAACATCACCGGCTACTCCGTCCTCTCTGGTTTAGCAATGGGAATGGAACCAATCTGCGGACAAGCTCACGGCGCTAAGCAAGGCAAGCTTCTTGGCCTCACCCTCCAAAGAACCGTCCTCCTCCTTCTTTCCACTTCCATACCTATCTCCTTCATGTGGCTCAACATGAAGACCATCCTCTTATGGTGTGGTCAAGACGATGACATATCCTCAATCGCACAAACTTTTATTTCTTTCTCCATTCCTGACCTCTTGTTTCTTTCTCTTCTTCACCCTCTCAGAGTCTTTCTCAGAACCCAGAGCATCACGTGGCCTTTAACTTATTGCTCAGTCGTCTCTGTTCTCCTCCATGTGCCGTTAAATTTTCTTCTGGTTGTTTACTTCAAGATGGGTATTGCTGGTGTGGCCATAGCCATGGTTTGGACCAACCTCAACCTCTTTCTCTTCCTCTGTTCCTTTGTCTACTTCTCCGATGTATGTAAGGACTCGTGGGTCCCTCTTAGCATTGACTGTCTCAAGGGCTGGTCTTCTCTTCTTGCTCTTGCCATTCCAACCTGCGTCTCCGTCTGCCTCGAGTGGTGGTGGTACGAGCTCATGATAATGCTGTGTGGCCTTCTCGGTAATCCCAAAGCCACCATTGCATCAATGGGGATTCTGATTCAAACAACCTCACTCGTCTATGTCTTCCCATCGTCCTTAAGTCTTGGTGTTTCCACAAGAGTGGGGAACGAGCTAGGCGCGAACCGCCCTGGAAAGGCCCGCATTTCCATGATCGTCTCGCTCTTCTGTGCCGTCGGCTTGGGCCTCGGGGCTATGGGTTTCACCACCGTAATGAGGCATCAGTGGGGGAGATTCTTCAGCGGTGATGAAGAGATCCTCAAGCTCACGGCCATCGCATTGCCTATCGCCGGCCTGTGTGAGCTCGGAAACTGTCCACAGACCACCGGTTGTGGAGTTCTGAGAGGCAGCGCCAGACCCACCATTGGAGCTAACATCAACCTCGGTTCGTTTTACTTAGTGGGCATGCCGGTGGCGATCCTCCTAGGGTTCATTGCAAAACTGGGTTTTGCTGGGCTCTGGCTCGGCTTGCTTTCTGCTCAAGCCTCGTGCGCGTGCCTCATGCTGTTTGTTCTGTGCACAACGGATTGGAATGTGCTCGCAGAAAGAGCAAGGGAGCTAACTTCAGCCGATGCTGCAAATTATGGTGTATTGCCCACATTCACAAAAACAGAGTGTAACAAGAAGGATTCGCTTAAAGAGATAGGGATCCCTGGTCCACCCTCTCTTGAAACAGAACCACTCATATACCCATTTCACATCCTTCCACATGGCACATGCAGTGGATTAGTTAGTTAA 1467 0.5051 MMIGVVLCQKEIANAHLYMQSQSEMELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAHGAKQGKLLGLTLQRTVLLLLSTSIPISFMWLNMKTILLWCGQDDDISSIAQTFISFSIPDLLFLSLLHPLRVFLRTQSITWPLTYCSVVSVLLHVPLNFLLVVYFKMGIAGVAIAMVWTNLNLFLFLCSFVYFSDVCKDSWVPLSIDCLKGWSSLLALAIPTCVSVCLEWWWYELMIMLCGLLGNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANRPGKARISMIVSLFCAVGLGLGAMGFTTVMRHQWGRFFSGDEEILKLTAIALPIAGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAILLGFIAKLGFAGLWLGLLSAQASCACLMLFVLCTTDWNVLAERARELTSADAANYGVLPTFTKTECNKKDSLKEIGIPGPPSLETEPLIYPFHILPHGTCSGLVS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1639 488 CDD MATE_eukaryotic 22 426 IPR045069 GO:0042910|GO:1990961
Lele27g1639 488 Pfam MatE 23 160 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lele27g1639 488 Pfam MatE 221 383 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lele27g1639 488 PANTHER MULTIDRUG RESISTANCE PROTEIN 26 420 - -
Lele27g1639 488 TIGRFAM matE: MATE efflux family protein 23 397 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1639 Lele-ChrLele27 21914594 21918290 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0446 25 2795072 2796831 Lele27g1639 27 21914594 21918290 hybridization
Lele26g0457 26 2899485 2904469 Lele27g1639 27 21914594 21918290 hybridization