LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele27g1113	ATGCCGTATTGCGACGTCGGAACAAATCAAGCGACCCCCAACGCCCACCTTAACAATGAAATTAAGATATTTTATCGAACTTACGGTCATGGACCTACTAAAGTTCTCCTCGTCATAGGATTGGCCGGGACACATGACTCATGGGGCCCTCAAATCAAGGGGCTGACGGGAACCGTCTTGCCCAATGAAGATGACGACGACTCCGGTGACGCGGATTGGAATTCAGCTGATCAGCGATGTGGAGATGACAATGAGAGTGGTGGTGGTATCGAGGTTTGCGCATTTGATAACCGCGGTATGGGTCGGAGCTCAGTACCTAACAAAAAGTCCGCCTATACAACAAAAATCATGGCGAAGGACGCGATTGCTTTATTAGATCGTCTGGGATGGAAAAAAGCCCATATTATTGGGCATTCAATGGGAGCTATGATAGCATGTAAACTAGGGGCGATGGTGCCTGATAGAGTTCTCTCGTTAGCATTGCTCAATGTAACAGGTGGAGGTTTTGAATGCTTTCCAAAGCTTAACCGACAAACATTCTCTATTGCTTACCGTTTCTTAAAAGCAAAGACTCCTGAACTTAGAGCTGCTGTTGACTTGGACACCCACTACTCAAAGGAATATCTTGAGGAATATGTTGGAAACGAAAAGAGGAGAACAATCTTATATCAGCAATACGTTAAAGGTATATCAACAACTGGGATGCAGTCAAATTATGGTTTTGAGGGCCAGGTCAATGCCTGTTGGAGACATAAAATGACTCGATCTGAGATTGACTTGATAAAATCCGCCGGTTTTCTTGTTTCAGTCATACACGGCAGGTTTGATGTAATTGCTCAGATAAACTATGCAAGAAGATTAGCAGAGAGGCTGTATCCGATGGCTAGAATGGTGGATCTTTTTGGAGGTCATTTAGTAAGTCACGAGAGAACCGAAGAGGTCAATCAAGCACTTCTTGACTTGATCAAGGCATCAGAAGTAAAGATGAACCCAGAAGATTGGACTAATTTGCCTAAGAAGACTACTTGGTGGACAGAGAAAAGGACGTTATTGTCAAGTCAAAACATTCAGGGTGGAAGTGTCTCCATAAAGTGTTTCGTCTTAGAAAAACTGCATCTCTTTCTTATATTTCTCTTTAGTATGGTCCTTTTGGTATTTGAGTATGGTAAAAAGCTTCTGAAAAGTGTGGTCAAGCCAGTTCGAGTTGCAAATTCCCCGTCCTAA	1224	0.4322	MPYCDVGTNQATPNAHLNNEIKIFYRTYGHGPTKVLLVIGLAGTHDSWGPQIKGLTGTVLPNEDDDDSGDADWNSADQRCGDDNESGGGIEVCAFDNRGMGRSSVPNKKSAYTTKIMAKDAIALLDRLGWKKAHIIGHSMGAMIACKLGAMVPDRVLSLALLNVTGGGFECFPKLNRQTFSIAYRFLKAKTPELRAAVDLDTHYSKEYLEEYVGNEKRRTILYQQYVKGISTTGMQSNYGFEGQVNACWRHKMTRSEIDLIKSAGFLVSVIHGRFDVIAQINYARRLAERLYPMARMVDLFGGHLVSHERTEEVNQALLDLIKASEVKMNPEDWTNLPKKTTWWTEKRTLLSSQNIQGGSVSIKCFVLEKLHLFLIFLFSMVLLVFEYGKKLLKSVVKPVRVANSPS	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele27g1113	407	PRINTS	Epoxide hydrolase signature	135	148	IPR000639	GO:0003824
	Lele27g1113	407	PRINTS	Epoxide hydrolase signature	299	321	IPR000639	GO:0003824
	Lele27g1113	407	PRINTS	Epoxide hydrolase signature	89	104	IPR000639	GO:0003824
	Lele27g1113	407	PRINTS	Epoxide hydrolase signature	149	162	IPR000639	GO:0003824
	Lele27g1113	407	PANTHER	HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN	13	327	-	-
	Lele27g1113	407	Pfam	alpha/beta hydrolase fold	82	164	IPR000073	-
	Lele27g1113	407	Gene3D	alpha/beta hydrolase	15	331	IPR029058	-
	Lele27g1113	407	SUPERFAMILY	alpha/beta-Hydrolases	19	320	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele27g1113	Lele-ChrLele27	18464377	18469341	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele27g1113	89	165	Acyl Lipid Metabolism Gene Families	AT4G02340	36.364	2.70e-08	53.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele25g0965	25	6210309	6215153	Lele27g1113	27	18464377	18469341	hybridization
	Lele26g0969	26	6314249	6319062	Lele27g1113	27	18464377	18469341	hybridization