Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1712 ATGGCATTAATAGCCCTTCAACCACAGGGCTCGTGTGTGACATTTTCCTCAAGGCATGCACCATGGAGCAAAAGTCTGAAGTTGAAGCAGTGTTCAACAAAACATCACAGGGTTGGCAGAACCGATTGGCGTTACCTATTTAAGTGGTGTATTTTAAGATTTCATGCTTATATTTCTCCATCTGTATGTCCCAGCGTAGGGCCTCCTTGCATTTCTGGAGCCAAGATTGAACCTTTCAGAATTTCAGCCTTCAAAGGCAGTTTCCAAAATTATCAAAAGGGAGGTAGACCTAACGGATTGAAAGTTCCTAAGGCCCAAAATGTTCCACTTTCTTATGCTTCTGAAGCAAATGACGACCTTGCAAATGAGAATCTTCCAACGTCAACTGCTGTTCATAAACTTTTCAAGAAGTGGCTGACAGCATTGTGCACACAGCCAGCATGTGAAGAAGTGAAAGACATTTTGGGAGAACCATCTAAAGGGGCTTTACCAGAAACTCTTGATGGCTCACGAAGTACAGAAAGAGGTGAAATTTTGAAGGTAGCATGGATCCATTTTCTGGCCCTGGACGAGACAATAAAGATTCCTTTACTGATATTTTACATGACAATTCTCATGTGTCAGCTTGGATTTGTTGGTGTTCCTTTTTATTTGGCTGTTAACGTCAGATACGGAGCCAAAGTTTCAAAGGAATTAACTCCTTTGTGGGTTGTGGGGCCCTTAATTGTGGCTCTCTACGTTGTAATAATCCGGAAGTTATGGTCCCTCTATGTCTTCAGCTTCAAGCAAACTGTCAAAGTAATTAAGAATTTTCCCTCTTACTGCATTTTGGCCTACAGCTACGTTTTTGGTGGCAAGATCAAAGAAGATATCCAAACTTTCTTGCAGCCTATATTGAACATAAAAGATATTGATTACAAAGAACAATCAAGAAGAAAATTGAAAGAACTGAAAGAATGGATAGTGGAGAAATACCTTGATTTCGTGGAATCAATATGGCCCTATTATTGTAGGACGATTAGATCTCCCTTGAAGGGAAAAGGGAAATCTAGGGCATTGAAGGTTGGCGCCGCCAAGGCTGTCTTGCTGTTGCTGAGGCATAATTCAGTAACTTTTTCGTGTCTCGCCGGCGATCCGGAAAGGTTTTGTATTGGTTCTGCTTTGACAAACTTGCCAACCGACGGAGTACAGTTCAACGGTGGGAACATGAAAAATGGGAGGCCATTTATAGTCACACGTTTCTTCTCATCACTCCACAGTACTATTTCTCTCATCCCGTCAACTCAAACTCCATACTCTTTTTCTCCCACTATCCTGCTATCCAGTACTTTACAGCATTACATCAATTCAGATACTCCTTCCGATGGTCTATATATTCATTCCCACATTCTGAAAACTGGGTTTGTTCCAGATAAGAATATTACTATCAAACTCTTAATATTGTATTTGAAATGTAATTCTTTGAGATTTGCACGCCAGATGTTTGACGGATTACCTGAGAAAACTCTATCTGCTTATAATTATATGATCAGTGGCTACCTTAAACATGGACAAGTCGAAGAATCCATAAATTTGGTGCGTTGGCTGTTAATCTCGGGGGGGAAACCTGATGGTTATACTTTTTCAATGATTTTAAAAGCATCAACTTCTTTCTCTGGGAATGTTACTCTTGGAGATCTTGGAAGAGTAGTACATGCCCAAGTCCTCAAATCTGATGTGGAGCTGGATGATGTTATTTGTACGGCACTTGTTGACTCTTATGTTAAGAATGGGAAGGTTGTTTATGCAAGGATCGTGTTTGATATGATGTTAGAAAAGAATGTGATATGTTCAACGTCCCTCATTTCTGGTTACATGAATCAAGGCTCTGTGGAAGCTGCTGAATATATATTTCACAAAACGGTAGAGAAGGATATTGTAGCATTCAATGCGATGATTGAAGGATACAGTAAATCATCTGAACATGCCATGAAATCTGTTGAAGTTTATATTGACATGCAAAGGATGAACTTTCGACCAAATATTTCTACATTTGCCAGCATAATCGGTGCTTGTTCAACACTTGCAGCACTTGAACTTGGTCAGCAAGTACAAAGTCAGCTGATAAAGACTCAACTTTTCTTTAACATAAAAATTGGAAGTGCACTAATAGACATGTATTCCAAATGCGGAAGAGTGGCTGATGCTCGGAGAGTTTTCGACCACATGCCCGAAAAGAATGTTTTCTCTTGGACATCTATGATTGATGGATATGGGAAGAATTGTTTTTCAAATGAAGCACTTGATCTATTTTGGAGGATGTGGAAAGAACATTGCATTGAACCTAATTTTGTGACATTCCTTAGCGTTCTCTCAGCTTGCGCTCATGCTGGGCTTGTAGATAAGGGTTGGGAGATCTTTCACAGTATGGAGAACGAATACTCACTAAAGGCACGGATGGAACATTATGCTTGTATGGTTGATCTATTAGGACGAGCAGGAAGGTTGCATCAGGCTTGGGACTTTGTGATGAGGATGCCTGAGAGACCCAATTCTGATGTTTGGGCTGCACTGCTTAGTTCATGCAGACTCCATGGTAATTTGGAGATGGCAAAAGTAGCAGCAGATGAGCTTTTCAAGTTGAATGCTGATGGACGACCAGGGGCATATGTTGCGCTATCAAACACTTTAGCAGCTGCTGGGAAATGGGATGGTGTGAGTGAACTTAGGGAAATAATGAGTAAGAGAGGCATTTCAAAGGATACGGCTTTCAGTTGGGTTGAAGTAGATAGTGTCCGTTAG 2781 0.407 MALIALQPQGSCVTFSSRHAPWSKSLKLKQCSTKHHRVGRTDWRYLFKWCILRFHAYISPSVCPSVGPPCISGAKIEPFRISAFKGSFQNYQKGGRPNGLKVPKAQNVPLSYASEANDDLANENLPTSTAVHKLFKKWLTALCTQPACEEVKDILGEPSKGALPETLDGSRSTERGEILKVAWIHFLALDETIKIPLLIFYMTILMCQLGFVGVPFYLAVNVRYGAKVSKELTPLWVVGPLIVALYVVIIRKLWSLYVFSFKQTVKVIKNFPSYCILAYSYVFGGKIKEDIQTFLQPILNIKDIDYKEQSRRKLKELKEWIVEKYLDFVESIWPYYCRTIRSPLKGKGKSRALKVGAAKAVLLLLRHNSVTFSCLAGDPERFCIGSALTNLPTDGVQFNGGNMKNGRPFIVTRFFSSLHSTISLIPSTQTPYSFSPTILLSSTLQHYINSDTPSDGLYIHSHILKTGFVPDKNITIKLLILYLKCNSLRFARQMFDGLPEKTLSAYNYMISGYLKHGQVEESINLVRWLLISGGKPDGYTFSMILKASTSFSGNVTLGDLGRVVHAQVLKSDVELDDVICTALVDSYVKNGKVVYARIVFDMMLEKNVICSTSLISGYMNQGSVEAAEYIFHKTVEKDIVAFNAMIEGYSKSSEHAMKSVEVYIDMQRMNFRPNISTFASIIGACSTLAALELGQQVQSQLIKTQLFFNIKIGSALIDMYSKCGRVADARRVFDHMPEKNVFSWTSMIDGYGKNCFSNEALDLFWRMWKEHCIEPNFVTFLSVLSACAHAGLVDKGWEIFHSMENEYSLKARMEHYACMVDLLGRAGRLHQAWDFVMRMPERPNSDVWAALLSSCRLHGNLEMAKVAADELFKLNADGRPGAYVALSNTLAAAGKWDGVSELREIMSKRGISKDTAFSWVEVDSVR 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1712 926 TIGRFAM PPR: pentatricopeptide repeat domain 715 741 IPR002885 -
Lele24g1712 926 TIGRFAM PPR: pentatricopeptide repeat domain 778 805 IPR002885 -
Lele24g1712 926 TIGRFAM PPR: pentatricopeptide repeat domain 742 776 IPR002885 -
Lele24g1712 926 TIGRFAM PPR: pentatricopeptide repeat domain 578 610 IPR002885 -
Lele24g1712 926 TIGRFAM PPR: pentatricopeptide repeat domain 612 640 IPR002885 -
Lele24g1712 926 TIGRFAM PPR: pentatricopeptide repeat domain 640 675 IPR002885 -
Lele24g1712 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 776 806 IPR002885 -
Lele24g1712 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 673 IPR002885 -
Lele24g1712 926 Pfam PPR repeat 578 608 IPR002885 -
Lele24g1712 926 Gene3D Tetratricopeptide repeat domain 554 657 IPR011990 GO:0005515
Lele24g1712 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 709 739 IPR002885 -
Lele24g1712 926 Gene3D Tetratricopeptide repeat domain 433 553 IPR011990 GO:0005515
Lele24g1712 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Lele24g1712 926 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 444 923 - -
Lele24g1712 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Lele24g1712 926 Gene3D Tetratricopeptide repeat domain 811 923 IPR011990 GO:0005515
Lele24g1712 926 Gene3D Tetratricopeptide repeat domain 658 810 IPR011990 GO:0005515
Lele24g1712 926 Pfam PPR repeat family 637 685 IPR002885 -
Lele24g1712 926 Pfam PPR repeat family 504 547 IPR002885 -
Lele24g1712 926 Pfam PPR repeat family 739 788 IPR002885 -
Lele24g1712 926 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 740 775 IPR002885 -
Lele24g1712 926 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 711 926 - -
Lele24g1712 926 Pfam E motif 858 921 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1712 Lele-ChrLele24 22425151 22431252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1712 403 922 Glycoside Hydrolase AT3G49170 32.190 4.96e-80 275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1712 24 22425151 22431252 Lele24g1712 24 22425151 22431252 ECH
Lele21g1771 21 25412766 25415557 Lele24g1712 24 22425151 22431252 hybridization
Lele22g1747 22 22771048 22775740 Lele24g1712 24 22425151 22431252 hybridization