Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0727 ATGGCTTCCATTGCCGGATCAAACTGTGTTGCTTTCAAAACCCCCGTCGTTTCGCCCAAATTCGGAGGATTTTCTAACGGGAATGTCGCTCATCTTCATGTGAACCAGCTCCGTCCCATTTCGGGAATTCGCAGCAGATCCAACAGTTCATTTGGATCCTCTGCTATAAGAGCTCAGGTTGCCACTATTGAAGAAGCAGGAACTGGAACTGCCCAAAATGTTGAAGCACCTGTTGTTGTAGTGACTGGAGCCTCCAGAGGTATTGGTCGAGCAATTGCATTGTCGTTGGGTAAAGCTGGTTGCAAGGTCCTTGTTAATTATGCAAGATCATCCAAAGAGGCAGAGGAGGTGTCCAAGCAGATTGAGGAATATGGTGGACAAGCTCTTACATTCGGGGGAGATGTTTCTAATGAAGCAGATGTGGAGGCTATGATTAAAACTGCAGTTGATGCTTGGGGAACTGTTGATGTGTTGGTAAACAATGCAGGAATCACTAAGGATGGTTTGTTAATGAGAATGAAGAAATCTCAATGGCAGGATGTTATTGATCTCAATCTCACTGGTGTTTTTCTTTGCACCCAAGCAGCTGCTAAAATTATGATGAAGAAAAAGAAGGGACGGATAATCAACATTGCATCAGTTGTTGGTCTAGTTGGCAATGTTGGACAAGCCAATTATAGTGCAGCAAAGGCAGGAGTAATTGGCCTGACGAAAACTGTTGCAAGGGAATATGCAAGCAGAAACATCAATGTCAACGCTGTTGCCCCAGGGTTTATTGCATCGGACATGACTGCCAAACTTGGAGAGGACATCGAGAAAAAAATTTTGGAGTCAATCCCCTTAGGAAGATATGGACAAGCAGAAGAAGTAGCTGGACTGGTGGAATTCTTGGCTCTTAATCCTGCTGCCAGTTACATCACTGGACAGGTGTTAACTATTGATGGAGGAATGGTGATGTAA 960 0.4437 MASIAGSNCVAFKTPVVSPKFGGFSNGNVAHLHVNQLRPISGIRSRSNSSFGSSAIRAQVATIEEAGTGTAQNVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEEVSKQIEEYGGQALTFGGDVSNEADVEAMIKTAVDAWGTVDVLVNNAGITKDGLLMRMKKSQWQDVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAREYASRNINVNAVAPGFIASDMTAKLGEDIEKKILESIPLGRYGQAEEVAGLVEFLALNPAASYITGQVLTIDGGMVM 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0727 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 78 319 IPR036291 -
Lele23g0727 319 PRINTS Glucose/ribitol dehydrogenase family signature 247 264 IPR002347 -
Lele23g0727 319 PRINTS Glucose/ribitol dehydrogenase family signature 78 95 IPR002347 -
Lele23g0727 319 PRINTS Glucose/ribitol dehydrogenase family signature 200 216 IPR002347 -
Lele23g0727 319 PRINTS Glucose/ribitol dehydrogenase family signature 153 164 IPR002347 -
Lele23g0727 319 PRINTS Glucose/ribitol dehydrogenase family signature 280 300 IPR002347 -
Lele23g0727 319 PRINTS Glucose/ribitol dehydrogenase family signature 226 245 IPR002347 -
Lele23g0727 319 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 73 318 - -
Lele23g0727 319 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 76 319 - -
Lele23g0727 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 226 245 IPR002347 -
Lele23g0727 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 164 IPR002347 -
Lele23g0727 319 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 214 IPR002347 -
Lele23g0727 319 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 77 262 - -
Lele23g0727 319 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 79 318 IPR011284 GO:0004316|GO:0006633|GO:0051287
Lele23g0727 319 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 213 241 IPR020904 GO:0016491
Lele23g0727 319 Pfam Enoyl-(Acyl carrier protein) reductase 83 317 - -
Lele23g0727 319 CDD BKR_SDR_c 78 318 - -
Lele23g0727 319 Gene3D - 76 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0727 Lele-ChrLele23 5821576 5825223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0727 33 319 Acyl Lipid Metabolism Gene Families AT1G24360 71.429 7.85e-155 434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1306 21 21224325 21227932 Lele23g0727 23 5821576 5825223 hybridization
Lele22g1305 22 18536784 18540522 Lele23g0727 23 5821576 5825223 hybridization