Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1328 ATGAAATTGGCTTCCAAAGGACTCAACATCCTTCTGGTCGGTCGAAACCCTAAAAAGCTCGAAGCCACATCGAAGGAGATAAGAGACAGACATGGTGAACATGTTGAAGTCAAGCTTGTGGGGATAGACTTTGAGAAAGTTAATGGAGAAGTAATAGTGAAGAAGATGGAGGAAGCAACAGAAAGTTTAGATGTTGGAATGTTGGTGAATAATGCAAGCATGGCAAACCCTTATCCTAGGTTTTTTCATGAAGAAGACTTCGAGTTTATCGAAGCGATTATCAAAGTGAACGTGGAAACAATAACTTGTGTGACGAAGGAAGAGATTAAAGGAACGAAGAGGAAGAAAAAAGGAGCCATCATCAACATTGGTTCAGCTTCTAGTGCTGTACTTCCTTCCTTTCCTCTCTGTCCTCTCTATGCTGCCACAGAAGCATACTTTGAGGTGTTCTCAAAAGGCATTGGTTTAGAATACAAATCACAAGGAATTGACGTCCAGTGTCAGCGGCTATGTGTGAAGCAAGGAAAGGTGTTTTATGGAGAGGTGAAAAGGATCAATGAACCATTTACAGATTGGGAGAATGGGGGGAAGAAGATGTTGAGGAATGAGCAAAGGAAAGATGAGAGCTTGACAACAGACCTAGGCATAACTCCAATTAGTAGTTGGAGGTGCCTCGTCTTAATGTGGTCAAAAGTGTCCTTATGGAGGGGAGGAGACCTTTACAGCGATCAAATTGATTTTGCGGATACGTTCTTACCTGCCCCAGGGTTCAACAAATCAATAGTCTGCGCTGCGTGCTGTATCATAGCGAGGCTGAAAACCCAACCTTTATGGTTTGGTGTGCTCTTCGCTTTGGGTTTATTCACCTTTCTGAGAATTTTCCTAGCTTTTCTCAGAGGGATCTATGTCAATTTTCTCAGAGCCCCCAAAAATCTCAAGAAATACGGATCTTGGGCGCTCATTACTGGACCCACAGACGGTATTGGCAAGGGCTATGCATTTCAGTTGGCTCGTGCAGGGCTTAATCTGGTTTTGGTCGGTCGGAATCCGGATAAGCTGAAGGATGTTTCCGATTCGATTCTAGCTAAGTACGGGAAAACCCAGATTAAGACGGTGGTCGTTGATTTTTCCGGTGATCTTTCTGAGGGTATGGTCAAGATTCGTGAAGCTACTGAAGGGTTAGATGTTGGAGTGTTGATTAATAACGTGGGAATCTCTTATCCTTACGCTAGATACTTCCACGAAGTGGATGAGGAACTTCTGAAGAACTTGATTAAAGTGAATGTAGAAGGAACTACCAAGGTTACACATACTGTTCTTCCTGGAATGATTCAGAGAAAGAGAGGAGCAATCGTTAATATTGGTTCTGGAGCAGCAATTGTGATTCCTTCAGATCCTCTTTATGCCGTGTATGCTGCAACAAAAGCGTACATAGATCAGTTCTCAAGGTGTCTATATGTTGAATACAAGAAAAGTGGGATTGATGTCCAGTGTCAGGTCCCATTATATGTGGCAACAAAGATGGCATCAATAAAGAGATCTTCATTTTTCGTGCCATCGACTGATGGATATGCGAAAGCCGGCATGCGTTGGATAGGGTACGAGCCTCGCTGCACACCTTACTGGCCACATTCCATTCTGTGGGCTTTGGCTCACTCGTTGCCGGAGTCTCTGGTTGACACTTGGCGTCTCGGGTTCTGCCAAGGCATTCGAAAGAGGGGGCAACTCAAGGATTCAAGGAAGAAGGAATAA 1752 0.4401 MKLASKGLNILLVGRNPKKLEATSKEIRDRHGEHVEVKLVGIDFEKVNGEVIVKKMEEATESLDVGMLVNNASMANPYPRFFHEEDFEFIEAIIKVNVETITCVTKEEIKGTKRKKKGAIINIGSASSAVLPSFPLCPLYAATEAYFEVFSKGIGLEYKSQGIDVQCQRLCVKQGKVFYGEVKRINEPFTDWENGGKKMLRNEQRKDESLTTDLGITPISSWRCLVLMWSKVSLWRGGDLYSDQIDFADTFLPAPGFNKSIVCAACCIIARLKTQPLWFGVLFALGLFTFLRIFLAFLRGIYVNFLRAPKNLKKYGSWALITGPTDGIGKGYAFQLARAGLNLVLVGRNPDKLKDVSDSILAKYGKTQIKTVVVDFSGDLSEGMVKIREATEGLDVGVLINNVGISYPYARYFHEVDEELLKNLIKVNVEGTTKVTHTVLPGMIQRKRGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIKRSSFFVPSTDGYAKAGMRWIGYEPRCTPYWPHSILWALAHSLPESLVDTWRLGFCQGIRKRGQLKDSRKKE 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1328 583 FunFam very-long-chain 3-oxoacyl-CoA reductase 1 312 540 - -
Lele22g1328 583 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 316 520 IPR036291 -
Lele22g1328 583 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 168 IPR036291 -
Lele22g1328 583 PANTHER RH59310P 277 582 - -
Lele22g1328 583 PRINTS Glucose/ribitol dehydrogenase family signature 394 405 IPR002347 -
Lele22g1328 583 PRINTS Glucose/ribitol dehydrogenase family signature 443 459 IPR002347 -
Lele22g1328 583 PRINTS Glucose/ribitol dehydrogenase family signature 471 490 IPR002347 -
Lele22g1328 583 PRINTS Glucose/ribitol dehydrogenase family signature 492 509 IPR002347 -
Lele22g1328 583 PRINTS Glucose/ribitol dehydrogenase family signature 318 335 IPR002347 -
Lele22g1328 583 CDD 17beta-HSD1_like_SDR_c 316 558 - -
Lele22g1328 583 Gene3D - 1 181 - -
Lele22g1328 583 Gene3D - 312 528 - -
Lele22g1328 583 Pfam short chain dehydrogenase 2 167 IPR002347 -
Lele22g1328 583 Pfam short chain dehydrogenase 318 510 IPR002347 -
Lele22g1328 583 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 449 457 IPR002347 -
Lele22g1328 583 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 394 405 IPR002347 -
Lele22g1328 583 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 471 490 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1328 Lele-ChrLele22 19008333 19018555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1328 268 583 Lipid Metabolism Gene Families AT1G67730 63.924 4.84e-156 448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1328 22 19008333 19018555 Lele22g1328 22 19008333 19018555 ECH
Lele22g1328 22 19008333 19018555 Lele23g0693 23 5389514 5391587 hybridization
Lele22g1328 22 19008333 19018555 Lele24g1287 24 18844861 18845281 hybridization