Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1806 ATGGTCATATGCGCAGCGGCCACCGCTGCCACTGTTGTTAGCGGTAACTCACTAACTCGTTGTATGATAAGAACCAAAACAAATTCTTTGCAATACCAAGACATGGGGGACAGCAAGCGAAAGAGAGGACGCAAACCCAAAAATCCTGCTACGGAAATCCTAGATTTGCCTACCACTGGCACTGCCCCTAATAACAATGGCCACAACCCATCTACTAAGGATGATGGTTTCTCTGTTGGCAATGTTGACCTAATTGACAACACTACCTCTCCACACTACCGTCGCCGACACAAGAAGTCAACCAATCACTCTGACAGGCTTGATAAGGCACCTGTAATTTCTACTGCTAGACGGGTCTCCCGTTCTGTTGCCAATGATGAAGATTTTACTGTTCCTGGTGATACAGGGGGTTCCATGGCAGTAGCGATAGCCATGGAAGCGGATCCAGCATGGGAGAGTGTTTCAGCAAGAGTGGTGCCAGCAATGGACTCTGTTGTTAAGGTGTTTTGCGTGCACACAGAACCTAATTTTTCATTGCCGTGGCAGAGGAAAAGGCAGTACAGCTCTAGCAGTAGTGGGTTTGTGATCAGTGGGAGGAGGGTGCTCACCAATGCCCATTCAGTGGAGCACTACACCCAAGTCAAGCTCAAGAAACGTGGCTCCGATACCAAATACTTGGCCACAGTGCTGGCCATTGGGACCGAGTGTGACATTGCCATGTTAACTGTTGAAGATGATGAATTCTGGCATGGGATGTCACCTGTAGAGTTCGGGGATTTGCCCACACTACAAGATGCGGTTATTGTTGTTGGTTATCCTATTGGTGGAGACACTATTTCGGTGACTAGTGGTGTGGTATCTCGCATTGAGATTCTATCATATGTTCATGGTTCTGCTGAACTTCTAGGATTACAGATAGATGCTGCTATAAACTCAGGTAATTCTGGTGGACCTGCATTTAATGATAAAGGAAATTGCGTGGGAATTGCGTTTCAGTCCCTCAAACATGAAGATGCAGAAAATATAGGTTACGTCATTCCAACACCAGTTATCATGCATTTCATCCGTGATTATGAGAAGAATGGAGCATATACAGGATTCCCTGTCCTTGGGGTTGAGTGGCAGAAAATGGAAAATCCTGATCTGCGAATGGCAATGGGCATGAAATCTGATCAGAAGGGAGTACGTATTAGAAGAATTGATCCAACTGCTCCAGAATTTAATGTTTTGAAACCATCAGATGTTATTCTTAGCTTTGATGGGGTTGATATTGCCAATGATGGGACAGTTCCATTTCGCCATGGAGAGCGCATTGGTTTCAGTTATCTTATATCTCAGAAATACACTGGGGATAAAGCTGTAATCAAAGTATTGCGAAATTCTGAGATCTTCAAATTTAACATTAAACTTGGTAGTCACAAAAGGCTCATTCCGCCACATAGCAAGGGCAGGCCTCCCTCATATTATATCATCGCAGGATTTGTTTTTACAACTGTCTCAGTTCCATATCTTCGTTCTGAGTATGGAAAGGATTATGAATACGAAGCTCCAGTCAAGCTTTTGGATAAACTGCTGCATTCAATGCGGCAGTCACCAGATGAGCAACTTGTTGTGGTCTCTCAGGTGCTGGTAGCCGATATAAACATCGGATATGAAGATATTGTTAATACTCAGGTACTTGCTTTTAATGGTAAACCTGTGAAAAACCTGAAGAGCTTGGCCAGCATGGTAGAGAACTGCAATGATGAATATCTAAAATTCAATCTAGATTATGATCAGATAGTGGTCCTTCGGGCAGCTACGGCTAAAGCAGCTACTCTCAATATTCTCGCCACGCATTGCATTCCGTCAGCAATGTCAGCTGATCTCAAGGGATGA 1878 0.4425 MVICAAATAATVVSGNSLTRCMIRTKTNSLQYQDMGDSKRKRGRKPKNPATEILDLPTTGTAPNNNGHNPSTKDDGFSVGNVDLIDNTTSPHYRRRHKKSTNHSDRLDKAPVISTARRVSRSVANDEDFTVPGDTGGSMAVAIAMEADPAWESVSARVVPAMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVISGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVEDDEFWHGMSPVEFGDLPTLQDAVIVVGYPIGGDTISVTSGVVSRIEILSYVHGSAELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDAENIGYVIPTPVIMHFIRDYEKNGAYTGFPVLGVEWQKMENPDLRMAMGMKSDQKGVRIRRIDPTAPEFNVLKPSDVILSFDGVDIANDGTVPFRHGERIGFSYLISQKYTGDKAVIKVLRNSEIFKFNIKLGSHKRLIPPHSKGRPPSYYIIAGFVFTTVSVPYLRSEYGKDYEYEAPVKLLDKLLHSMRQSPDEQLVVVSQVLVADINIGYEDIVNTQVLAFNGKPVKNLKSLASMVENCNDEYLKFNLDYDQIVVLRAATAKAATLNILATHCIPSAMSADLKG 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1806 625 Pfam PDZ domain 368 470 IPR001478 GO:0005515
Lele21g1806 625 FunFam protease Do-like 9 250 360 - -
Lele21g1806 625 PRINTS HtrA/DegQ protease family signature 193 205 IPR001940 GO:0004252|GO:0006508
Lele21g1806 625 PRINTS HtrA/DegQ protease family signature 221 241 IPR001940 GO:0004252|GO:0006508
Lele21g1806 625 PRINTS HtrA/DegQ protease family signature 409 421 IPR001940 GO:0004252|GO:0006508
Lele21g1806 625 PRINTS HtrA/DegQ protease family signature 263 287 IPR001940 GO:0004252|GO:0006508
Lele21g1806 625 PRINTS HtrA/DegQ protease family signature 300 317 IPR001940 GO:0004252|GO:0006508
Lele21g1806 625 Gene3D - 249 360 IPR043504 -
Lele21g1806 625 MobiDBLite consensus disorder prediction 32 80 - -
Lele21g1806 625 MobiDBLite consensus disorder prediction 54 80 - -
Lele21g1806 625 SUPERFAMILY Trypsin-like serine proteases 160 362 IPR009003 -
Lele21g1806 625 SUPERFAMILY PDZ domain-like 393 475 IPR036034 GO:0005515
Lele21g1806 625 Pfam Trypsin-like peptidase domain 192 329 - -
Lele21g1806 625 Gene3D - 141 248 IPR043504 -
Lele21g1806 625 MobiDBLite consensus disorder prediction 86 105 - -
Lele21g1806 625 Gene3D - 476 625 IPR046449 -
Lele21g1806 625 FunFam Protease Do-like 9 142 248 - -
Lele21g1806 625 CDD PDZ_serine_protease 368 468 - -
Lele21g1806 625 Gene3D - 367 475 IPR036034 GO:0005515
Lele21g1806 625 Pfam PDZ domain 477 622 IPR041517 -
Lele21g1806 625 PANTHER - 98 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1806 Lele-ChrLele21 25693657 25700576 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1806 21 25693657 25700576 Lele21g1806 21 25693657 25700576 ECH
Lele21g1806 21 25693657 25700576 Lele23g0200 23 1319581 1327162 hybridization