Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1334 ATGCAGTGCTGTATCATAGCAAGGCTGAAAACCCAACCTTTATGGTTCGGCGTGCTCTTCGTTTTAGGTTTATTCACCCTTCTGAAAATTTTCCTAGCTTTTCTCAGATGGGTCTATGTCAATTTTCTCAGAGCCCCCAAAAATCTCAGGAAATACGGATCTTGGGCACTTATTACTGGACCCACAGATGGTATTGGCAAGGGCTATGCATTTCAGTTGGCTCGTGCAGGGCTTAATCTGGTTTTGGTGGGTCGGAATCCAGATAAGCTGAAGGATGTTTCAGATTCGATTCTAGCCAAGTACAAGAAAACCCAGATTAAGACGGTGGTCGTTGATTTTTCCGGTGATCTTTCCGAGGGTATGGTCAAGATTCGTGAAGCTATTGACGGGTTAGATGTTGGAGTGTTGATTAACAACGTGGGAATCTCATATCCTTACGCGAGATACTTCCATGAAGTGGATGAGGAACTTCTGAAGAATTTGATTAAAGTGAATGTGGAAGGAACTACCAAGGTTACACATACTGTTCTTCCTGGTATGCTTCAGAGAAAGAAAGGAGCAATCGTTAATATTGGTTCTGGAGCAGCAGTTGTAATTCCTTCAGATCCTCTTTATGCTGTGTATGCTGCCACAAAAGCGTACATAGATCAATTCTCGAGATGTCTCTATGTTGAATACAAGAAAAGTGGGATTGACGTCCAGTGTCAGGTCCCATTATATGTGGCAACAAAGATGGCATCAATAAAGAGATCTTCATTTTTCGTGCCATCAACTGACGGATATGCGAAAGCAGGCATTCATTGGATCGGATATGAGCCTCGATGCACGCCTTACTGGCCGCATTCCATTCTGTGGGCATTGGCTCACTCGTTGCCGGAGTCTCTGGTCGATGCTTGGCGTTTAAGGTTCTGCCAAGGCATTCGAAAGAGGGGACAACTCAAGGATTCAAGGAAGAAGGAATAG 963 0.4424 MQCCIIARLKTQPLWFGVLFVLGLFTLLKIFLAFLRWVYVNFLRAPKNLRKYGSWALITGPTDGIGKGYAFQLARAGLNLVLVGRNPDKLKDVSDSILAKYKKTQIKTVVVDFSGDLSEGMVKIREAIDGLDVGVLINNVGISYPYARYFHEVDEELLKNLIKVNVEGTTKVTHTVLPGMLQRKKGAIVNIGSGAAVVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIKRSSFFVPSTDGYAKAGIHWIGYEPRCTPYWPHSILWALAHSLPESLVDAWRLRFCQGIRKRGQLKDSRKKE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1334 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Lele21g1334 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Lele21g1334 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Lele21g1334 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 273 IPR036291 -
Lele21g1334 320 CDD 17beta-HSD1_like_SDR_c 53 295 - -
Lele21g1334 320 FunFam very-long-chain 3-oxoacyl-CoA reductase 1 49 277 - -
Lele21g1334 320 PIRSF 11-beta-HSD1 5 314 - -
Lele21g1334 320 Gene3D - 49 264 - -
Lele21g1334 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Lele21g1334 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Lele21g1334 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Lele21g1334 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Lele21g1334 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Lele21g1334 320 Pfam short chain dehydrogenase 55 247 IPR002347 -
Lele21g1334 320 PANTHER RH59310P 14 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1334 Lele-ChrLele21 21763408 21765445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1334 1 320 Lipid Metabolism Gene Families AT1G67730 64.688 2.04e-162 454
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1334 21 21763408 21765445 Lele21g1334 21 21763408 21765445 ECH
Lele21g1334 21 21763408 21765445 Lele23g0693 23 5389514 5391587 hybridization
Lele21g1334 21 21763408 21765445 Lele24g1287 24 18844861 18845281 hybridization