Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0685 ATGGGAGTTTTCACTTACCATGAGGAGAACGCTTCAAGCGTGGCTCCTTCTCGACTTTACAAAGCTCTCGTCTTAGATTTCGACAACCTCGTCCCAAAGATCATGGAAGCTGTTCTGCCATCCATTGAAATCCTTCAAGGCAATGGAGGACCTGGCACCACCAAGAAGATCACTTACCTTGAAGGTGGGGAAACAAAGTATGTGGTGCAAAAAGTGGAAGCAAAGGACGATGAAAACTATGCATACAAGTACAACGTAGAAGAAGGGAGTGCCTTACCAGAGGGAGTGGAGAAGATGACATTTGATCTGAAATCACAGGAAGGAGCTAATGGAGGATCCGTTTGGAAAGTCACTGTCACTTACTACACCAAAACAGATGCTCCTCCCAGTGACGAGGTGCTCACCAATGCAAAAGCCCAGGGTCAAGGCCTCTTCAAGGCTGTTGAAGCTTACCTTTTGGCTCATCCGGACTACTAA 477 0.4696 MGVFTYHEENASSVAPSRLYKALVLDFDNLVPKIMEAVLPSIEILQGNGGPGTTKKITYLEGGETKYVVQKVEAKDDENYAYKYNVEEGSALPEGVEKMTFDLKSQEGANGGSVWKVTVTYYTKTDAPPSDEVLTNAKAQGQGLFKAVEAYLLAHPDY 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0685 158 Gene3D - 2 158 IPR023393 -
Lele21g0685 158 Pfam Pathogenesis-related protein Bet v 1 family 1 155 IPR000916 GO:0006952
Lele21g0685 158 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lele21g0685 158 PANTHER - 1 157 - -
Lele21g0685 158 CDD Bet_v1-like 4 152 - -
Lele21g0685 158 SUPERFAMILY Bet v1-like 2 158 - -
Lele21g0685 158 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lele21g0685 158 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lele21g0685 158 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lele21g0685 158 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lele21g0685 158 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lele21g0685 158 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lele21g0685 158 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lele21g0685 158 FunFam Major pollen allergen Bet v 1-A 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0685 Lele-ChrLele21 4517000 4517862 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0685 21 4517000 4517862 Lele21g0685 21 4517000 4517862 ECH
Lele21g0685 21 4517000 4517862 Lele23g1355 23 18571226 18572176 hybridization